Gene Psyr_4147 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_4147 
Symbol 
ID3369684 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp4934535 
End bp4936070 
Gene Length1536 bp 
Protein Length511 aa 
Translation table11 
GC content58% 
IMG OID637654505 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_237215 
Protein GI66047374 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCATG CGCGCCGGCG AATAAGGTGT TTAGCCCCTG CCATGAAACC ATCGCTAGTC 
TTGAGAATGG GCCAGCAGCT GACGATGACA CCGCAGCTGC AACAGGCAAT CCGCTTACTT
CAGCTTTCCA CTCTGGATCT CCAGCAGGAG ATCCAGGAGG CGCTGGAGTC AAACCCTATG
CTGGAGCGGC AGGAAGAAGG CGACGACTTC GACCATTCCG ACCCGCTTGC CGACAACATC
GAACAAAAGC CCAACCCCGA CGTTCAGGAA CCGACCTATC AGGAATCCGC GCCTACCGTG
GACAACCTTG AAGAAGGTGA ATGGAACGAA CGCATTCCCA ACGAGCTGCC CGTCGATACC
GCATGGGAAG ACATCTACCA GACCAGCGCC AGCAGCCTGC CAAGCAACGA TGACGACGAG
TGGGACTTCA CCACGCGCAC CTCTGTGGGC GAAAGCCTGC AAAGCCACCT GCTGTGGCAA
CTGAATGTCG CGCCGATGTC CGACAAGGAC CGTCTGGTAG CGGTTACGCT GATCGACTGC
ATCAACAACC AGGGTTATCT CGACGAGACG CTCGATGAGA TTCTCGAGTC CTTCGACCCC
GAACTGGACA TCGAGCTCGA CGAGATCGAA GCCGTACTGC ACCGCATCCA GCAGTTTGAA
CCTGCCGGCA TCGGCGCTCG CAACCTGAGC GAATGCCTGC TGCTGCAACT GCGCCAGCTG
CCAGCAAAAA CACCCTGGCT GACAGAAGCA CAACGCCTGG TCAGCGACTA CATCGACCTG
CTCGGAAGCC GCGACTACGG CCAGCTGATG CGACGCATGA AGCTCAAGGA AGACGAGCTG
CGTCAGGTCA TCGAACTGGT GCAGAGCCTC AACCCGCGTC CAGGCTCGCA GATCGAATCC
ACAGAAGCCG AATACGTCAT TCCGGATGTG ATCGTGCGCA AGGACAATGA ACGCTGGCTG
GTCGAACTCA ATCAGGAGTC GGTGCCGCGC CTGCGCGTCA ATCCGCAATA CGCGGGCTTC
GTACGGCGCG CCGATACCAG CGCAGACAAC ACCTTCATGC GCAATCAGTT GCAGGAAGCG
CGCTGGTTCA TCAAGAGCCT GCAAAGCCGC AACGAAACGT TGATGAAGGT CGCCACGCAA
ATCGTCGAAC ATCAGCGCGG CTTTCTCGAG TACGGTGACG AGGCCATGAA GCCGCTCGTC
CTGCACGACA TCGCCGAGGC AGTGGGCATG CACGAGTCGA CCATCTCGCG CGTAACCACC
CAGAAATTCA TGCACACCCC ACGCGGCATT TACGAGCTGA AATACTTCTT CTCAAGCCAT
GTGAGCACCT CCGAGGGCGG TGAATGCTCG TCCACGGCAA TTCGCGCAAT CATCAAAAAA
CTGGTTGCGG CGGAAAATCA GAAAAAGCCG TTGAGTGATA GCAAGATCGC TGGTTTACTG
GAGGCACAAG GCATTCAAGT AGCCCGTCGC ACAGTCGCCA AGTACCGTGA GTCTCTCGGG
ATCGCCCCTT CCAGTGAGCG TAAGCGGCTG ATGTGA
 
Protein sequence
MAHARRRIRC LAPAMKPSLV LRMGQQLTMT PQLQQAIRLL QLSTLDLQQE IQEALESNPM 
LERQEEGDDF DHSDPLADNI EQKPNPDVQE PTYQESAPTV DNLEEGEWNE RIPNELPVDT
AWEDIYQTSA SSLPSNDDDE WDFTTRTSVG ESLQSHLLWQ LNVAPMSDKD RLVAVTLIDC
INNQGYLDET LDEILESFDP ELDIELDEIE AVLHRIQQFE PAGIGARNLS ECLLLQLRQL
PAKTPWLTEA QRLVSDYIDL LGSRDYGQLM RRMKLKEDEL RQVIELVQSL NPRPGSQIES
TEAEYVIPDV IVRKDNERWL VELNQESVPR LRVNPQYAGF VRRADTSADN TFMRNQLQEA
RWFIKSLQSR NETLMKVATQ IVEHQRGFLE YGDEAMKPLV LHDIAEAVGM HESTISRVTT
QKFMHTPRGI YELKYFFSSH VSTSEGGECS STAIRAIIKK LVAAENQKKP LSDSKIAGLL
EAQGIQVARR TVAKYRESLG IAPSSERKRL M