Gene Psyr_4106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_4106 
Symbol 
ID3369642 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp4895635 
End bp4897005 
Gene Length1371 bp 
Protein Length456 aa 
Translation table11 
GC content64% 
IMG OID637654464 
ProductUDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase 
Protein accessionYP_237174 
Protein GI66047333 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0770] UDP-N-acetylmuramyl pentapeptide synthase 
TIGRFAM ID[TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTAAGC CAATGACCTT CCGCGAACTG GTTGTACCAC TCGACGCCCG TCTGGTCGGC 
GGCGACTGCA GCTTTGCCGG CGTGAGCACC GACAGTCGTG GCATCGAGCC TGGGCAACTG
TTCGTGGCCC TGACCGGCCC GCGTTTCGAC GGTCATGAAT ACCTCGACCA AGTGGCTGCC
AAAGGTGCGG TCGGTGCGCT GGTCGAGCGC GAAGTGCAGG GCGCCGCCTT GCCGCAACTG
GTCGTGCTGG ATACCCGCAA GGCACTTGCC CAGCTGGGTG CCATGAATCG CAATGCGTTC
GTCGACCGGC CGGTTGCTGC CGTCACCGGG TCGAGTGGCA AAACCACGGT CAAGGAGATG
CTCGCGAGCA TCCTGCGCAC GCGCGGGCCT GTGCTGGCGA CCCGAGGCAA CCTGAACAAC
GAATTGGGCG TTCCACTGAC GCTGCTGGAA CTGGCTCCCG AATACACGTC CGCTGTGATC
GAACTGGGTG CATCGCGGGT TGGCGAGATT GCCTACACCG TGAGCCTTGC CAAGCCGCAC
GTCGCCATGA TTACCAACGC CGGCACCGCC CATGTTGGCG AGTTTGGCGG CCCGGACAGG
ATTGTCGAAG CCAAGGGCGA GATTCTGGAA GGTCTCGACG CGGGTGGCAC TGCAGTCTTG
AACCTGGAAG ACAAGGCGTT TCCGATCTGG CGCAAGCGCG CCGGCAATCG CAATATCCTG
ACCTTCGCAC TGACCGACTC TGCAGCGGAT GTGTACGCCA GCGAGCTCAG CCGTGATGCT
CGGGGCTGCC CGGCTTTCAA CCTCAACAGC CCGCTCGGCA CCGCCCGGGT TCAGCTGAAC
CTGCTCGGCA CGCACAATGT GTCCAACGCC CTGGCCGCTG CGGCTGCCGG CTGCGCAATG
GGTGTGCCGC TGGAAGGGAT CGTTACCGGG CTGAACAACG TGCAGCCGGT CAAGGGCCGT
GCCGTGGCGC AAATCGCCAG CAATGGCACG CGCGTCATTG ATGATACTTA CAACGCCAAC
CCTGCCTCGA TCAACGCGGC CGTCGACATC CTCACCGGCT TCACCGGTCG TACCGTACTG
GTGCTGGGCG ATATCGGCGA GCTGGGCGAC TGGGCCGAGC AGGGCCATCG CGAAGTCGGT
GCCTATGCCG CTGGCAAGGT GTCGGCGCTG TATGCCGTCG GCCCGTTGAT GACTCACGCC
GTCAGCGCCT TTGGCGAGCA CGCTTACCAC TTTGCCAGTC AGGCTGAACT GATTGCGGCG
CTGGGCGCCG AGCAGGACCC CGATACCACT TTACTGATCA AGGGCTCGCG TAGCGCTGCG
ATGGAACACG TCGTGGCTGC CTTGTGCGGT TCTAGCCTGG AGAAACATTA A
 
Protein sequence
MLKPMTFREL VVPLDARLVG GDCSFAGVST DSRGIEPGQL FVALTGPRFD GHEYLDQVAA 
KGAVGALVER EVQGAALPQL VVLDTRKALA QLGAMNRNAF VDRPVAAVTG SSGKTTVKEM
LASILRTRGP VLATRGNLNN ELGVPLTLLE LAPEYTSAVI ELGASRVGEI AYTVSLAKPH
VAMITNAGTA HVGEFGGPDR IVEAKGEILE GLDAGGTAVL NLEDKAFPIW RKRAGNRNIL
TFALTDSAAD VYASELSRDA RGCPAFNLNS PLGTARVQLN LLGTHNVSNA LAAAAAGCAM
GVPLEGIVTG LNNVQPVKGR AVAQIASNGT RVIDDTYNAN PASINAAVDI LTGFTGRTVL
VLGDIGELGD WAEQGHREVG AYAAGKVSAL YAVGPLMTHA VSAFGEHAYH FASQAELIAA
LGAEQDPDTT LLIKGSRSAA MEHVVAALCG SSLEKH