| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4100 |
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| Symbol | ddl |
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| ID | 3369636 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 4888521 |
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| End bp | 4889480 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637654458 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_237168 |
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| Protein GI | 66047327 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.555114 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAGCCG TTGCCCAGTC GTCCCTGCGC TCGACTCTCG AGCCGAAAAG CTTCGGCCGT
GTCGCCGTGC TCTTCGGTGG CAAGAGTGCC GAGCGTGCGG TCTCGCTGAA CTCGGGTAAT
GCCGTGCTCG GCGCGTTGCT CGAGGCTGGT GTGGATGCGT TCGGCATCGA TGTGGGCGAT
GACTTCCTGC AGCGACTGGT CAGCGAAAAA ATCGACCGTG CCTTTATTGT TCTGCACGGA
CGCGGCGGTG AAGACGGCAC CATGCAAGGC CTGCTGGAAT GCCTGGAAAT CCCTTATACC
GGCAGTGGCG TACTGGCTTC TGCGCTGGCG ATGGACAAGC TGCGCACCAA GCAGGTCTGG
CAGAGTCTGG GCCTTGCTAC ACCGGCGCAT GCCGTTCTTG AAAACGAGAG TGATTGTATT
TGCGCGGCGA CGGAACTGGG CTTGCCTTTG ATCGTCAAAC CGGCCCATGA AGGTTCAAGT
ATCGGTATGG CAAAGGTGAA CAGCGTCGAT GAATTGATCG CCGCCTGGAA AGCCGCCAGT
ACCTACGATT CGCAAGTATT AGTCGAACAA TGGATTCAGG GACCTGAGTT CACTGTGGCG
TCTCTGCGTG GCCAGGTGTT GCCTCCCATC GGCCTGGGCA CTCCTCACAG TTTTTATGAT
TACGATGCCA AGTACCTTGC GTCCGATACC CAGTATCGGA TTCCGTGCGG ACTTGGCGAT
GCGCAGGAAC AGGAACTCAA ACAACTTGCA GCACGTGCTT GCGATGCCAT TGGCATTGCA
GGGTGGGCGC GCACGGATGT CATGCAGGAC GCACAAGGCA AGTTCTGGTT ACTGGAAGTC
AATACTGTAC CGGGCATGAC CGATCACAGT CTGGTGCCTA TGGCGGCCCG TGCGGCAGGT
CTGGATTTTC AACAACTGGT GTTGGCGATT CTGGCCGACA GCGTTCAGGC GAGGGGTTAA
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| Protein sequence | MTAVAQSSLR STLEPKSFGR VAVLFGGKSA ERAVSLNSGN AVLGALLEAG VDAFGIDVGD
DFLQRLVSEK IDRAFIVLHG RGGEDGTMQG LLECLEIPYT GSGVLASALA MDKLRTKQVW
QSLGLATPAH AVLENESDCI CAATELGLPL IVKPAHEGSS IGMAKVNSVD ELIAAWKAAS
TYDSQVLVEQ WIQGPEFTVA SLRGQVLPPI GLGTPHSFYD YDAKYLASDT QYRIPCGLGD
AQEQELKQLA ARACDAIGIA GWARTDVMQD AQGKFWLLEV NTVPGMTDHS LVPMAARAAG
LDFQQLVLAI LADSVQARG
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