| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4080 |
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| Symbol | |
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| ID | 3369616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 4863154 |
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| End bp | 4865715 |
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| Gene Length | 2562 bp |
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| Protein Length | 853 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637654438 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_237148 |
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| Protein GI | 66047307 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAAGG ATCTAACGGC GCTGTTTGCG CCACAAAACC GTCGCCTGAT CAAGCTGACG
ACCGTTGCCC GTGACGAACA GGAACTGCTG CTGGAAAGCT TTTCCGGTAC TGAAAGCCTG
TCCGAACTGT TCAGCTTCGA GTTGTCGATG ATCAGCCGCG ATGCCGGCCT GGAGCTCAAA
TCGCAGATCG GCCAGCCTGC ACAACTGGCA ATAGAGCTGG CCACAGGCGA ATCGCGTTAC
ATCAATGGCT ATATCAGTGC CTTCAGCCTG GAAGGCAGCG ACGGCGGTCT GGCACGTTAC
AGCGCAACAC TGAGCCCCTG GCTGTGGATG CTCTCGCGAC GCGTCGACTC GCGCATATTT
CAGGAACAGA CCATCGAAGC CGTTATCCGA ACGGTATTTG CGGCCTATGG CGCGTTGCCC
GATTTCGAGT TTCAGCTCAG CCAGCCACTC AAGACACACA GTTACATCAC CCAGTACCGT
GAAAGCGATC TGACCTTTGT ATTGCGCTTG CTGGAACACG AAGGGTTGTT CTTCTATTTC
GATCACAATC AGGAAAAGCA CACGCTGATC ATTCTTGATC ACTCGCGTGA CCTCTCGCCC
CTGCCGCAAC AGCCCACCAT TCGTTATCAC AGCGCATCCG TTACCGAGAC AGCGGATTCG
ATTACCGAAT GGCGCAGCCA TCGACGCCTG CAGTCGGGGC GCATGTCCAT TCAGACATTT
GATTACAAGC AGCCGCGCAA TTCGCTGCCG GTTGGCATGC CGAGCCTCAA CGAGCAGGGC
AACGTCGATT CGTATGAAGT GTATGACGTG CTCGATCACT ACAGCCATGG CACCTTCAAA
GACGGTGAAC GCCTGGTACG TCAGCGTCTG GAGGCCATTG AAGTTCAGGG CAAGACATTC
ACCGGCAACA GTAACTGCCG CGCCATGTAC CCAGGCCACA CTTTTGAGCT GACCCAGCAT
TTTGATCATG ACCGCGGCTC TGCTGAAGAT CGCAGTTTTC TGCTGATAAC GGTCAAGCAT
GAGGGCAGCA ACAATTACCT GTCGGACGAA GGCGCGGGCT ACACGAACGA GTTCGTGTGC
ATTCGCCACA AGATTCCCTA CCGTCATCCG ATCACAGTCC CGCGCCCGAG CATTAACGGC
CCGCTGAGCG CCATCGTGGT CGGGCCGGAC GGTGAGGAAG TGTTCACTGA TGAACTGGCG
CGGATACAGG TCAGGTTCCA CTGGCAGCGC GGCGACAGCC TGCCGCAAGG CACCACTTGG
TTAAGGGTGG CGATGCCCAG TGCCGGCAGC GGCTTCGGGC ATCAGTTCAT GCCACGCATC
GGCCAGGAAG TGTTGGTGAC GTTTCTGGCA GGCGATATCG ACCGGCCTCT GGTGACGTCG
GTGCTCTATA ACAACATTAA TCTGCCGCCA CGCTTCAGCA AGGCCTCGGG GCTGCCCGGC
AACCGCACGC TGTCGGGGAT CCGCACCCAG GAACACAAAG GCAGCGGCTT CAACGAACTG
CTGTTCGATG ACACCCCAGG CTCGCTGCGC GCACGCATGG GCACGACCCA TCAGGCCACC
GCCCTCAACC TGGGCAAACT GACCGACCCG CGCACTGACG GCACCGCCCA GCCACGCGGC
AACGGCGCAG AACTGCGCAC CGATGCCGCC ATCGCCCTGC GTGCCGCGCA AGGCATGCTG
TTGACCACCT ACGCGCGTAC CGACGCAAAA GGCTCACAGC TGGATCGCGA AGAGCTGCTC
AAACTGCTGG CCGAGTGCGG CGAGCTGTTC AAATCTCTCG GCGAAACCGC CGCCGCACGT
GGCAGTCAGG CGGTGGATGT CAAAGGTATG GAAGCCTTGC GCCAGTCGCT TGATCAATGG
CCCGCGCCGG ACAATAACGG CCTGGGCGAC CCGGTACTGG CCATGACCGC AGTAGCAGGC
ATCGCCAGCG CCACGCCGCG CTCGCAGGTG CACTATGCCG GTGAAAATCA CGACACCACC
GCGCAGGACA ACCTGCAATT GACCAGCGGC GCGGCCATGC ACCTGCAAGC GGGCAAAGGG
CTGTCGGCCT TCGCCCAGGA CGCTGGCATC AGCGCCATCG CCAACCGCGG CAAAGTGCTG
GTGCAAGCGC AGGAAGACGA CATCGCCCTC AATGCCCAGA AAAACCTGCA CGTCTCGGCC
GTCGAAGGCG AAGTGGTCAT CACCGCGCCG ACCATCCGCC TGGTCGCCGA TGACGGCAGT
TACATCAAGA TTGGCGGCGG CGTCGAGATT GGCTCGCAAG GCAAAGTCAC TGTGCACGCC
AGCGAACACG ACTGGATCGG CCCCAAGACC GACAGCGCTG CGATCCCCTC ATTCGGCCGC
GACCCCGCCG CCCAGCAGGT CACCTTCCAC TACCCCGGCC ACAGCGAACA AAGCCCGCGG
GCAGCAGCGG ATCACTCGTA TGAAATCAAA CTGGAAGATG GCAGCCTGGT GAAAGGAATG
ACGAACGCAG ACGGACTGAC CGAGCGCGTG GAACGCGAAA TGATGCATCA GGCGCAAGTA
TCGGCACTGC GCAGCGGCAC CCCGAAAGGA GGTGCGCAAT GA
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| Protein sequence | MLKDLTALFA PQNRRLIKLT TVARDEQELL LESFSGTESL SELFSFELSM ISRDAGLELK
SQIGQPAQLA IELATGESRY INGYISAFSL EGSDGGLARY SATLSPWLWM LSRRVDSRIF
QEQTIEAVIR TVFAAYGALP DFEFQLSQPL KTHSYITQYR ESDLTFVLRL LEHEGLFFYF
DHNQEKHTLI ILDHSRDLSP LPQQPTIRYH SASVTETADS ITEWRSHRRL QSGRMSIQTF
DYKQPRNSLP VGMPSLNEQG NVDSYEVYDV LDHYSHGTFK DGERLVRQRL EAIEVQGKTF
TGNSNCRAMY PGHTFELTQH FDHDRGSAED RSFLLITVKH EGSNNYLSDE GAGYTNEFVC
IRHKIPYRHP ITVPRPSING PLSAIVVGPD GEEVFTDELA RIQVRFHWQR GDSLPQGTTW
LRVAMPSAGS GFGHQFMPRI GQEVLVTFLA GDIDRPLVTS VLYNNINLPP RFSKASGLPG
NRTLSGIRTQ EHKGSGFNEL LFDDTPGSLR ARMGTTHQAT ALNLGKLTDP RTDGTAQPRG
NGAELRTDAA IALRAAQGML LTTYARTDAK GSQLDREELL KLLAECGELF KSLGETAAAR
GSQAVDVKGM EALRQSLDQW PAPDNNGLGD PVLAMTAVAG IASATPRSQV HYAGENHDTT
AQDNLQLTSG AAMHLQAGKG LSAFAQDAGI SAIANRGKVL VQAQEDDIAL NAQKNLHVSA
VEGEVVITAP TIRLVADDGS YIKIGGGVEI GSQGKVTVHA SEHDWIGPKT DSAAIPSFGR
DPAAQQVTFH YPGHSEQSPR AAADHSYEIK LEDGSLVKGM TNADGLTERV EREMMHQAQV
SALRSGTPKG GAQ
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