| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4072 |
|---|
| Symbol | groEL |
|---|
| ID | 3369608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4855526 |
|---|
| End bp | 4857169 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637654430 |
|---|
| Product | chaperonin GroEL |
|---|
| Protein accession | YP_237140 |
|---|
| Protein GI | 66047299 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02348] chaperonin GroL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0436792 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCTA AAGAAGTTAA ATTCGGCGAT TCTGGCCGCA AAAAAATGCT CGCCGGTGTA
AACGTCCTGG CTGACGCAGT TAAAGCGACC CTGGGCCCTA AAGGCCGCAA CGTTATCATC
GAGAAAAGCT TTGGCGCTCC GCTGATCACC AAAGACGGTG TTTCGGTTGC CAAGGAAATC
GAGCTTAAAG ACCGTTTCGA AAACATGGGC GCGCAGCTGG TCAAAGACGT TGCTTCCCGT
GCCAACGATG ATGCAGGCGA CGGTACCACT ACCGCTACCG TTCTGGCTCA GGCCATCGTC
AACGAAGGCC TGAAGGCTGT CGCTGCCGGC ATGAACCCGA TGGACCTCAA GCGCGGCATC
GACAAGGCGA CCATCGCCAT TGTTGCCGAG CTGAAGAAGC TGTCCAAGCC ATGCACCGAC
ACCAAGGCAA TCGCCCAGGT CGGCACCATC TCGGCCAACT CTGATCACTC CATCGGCGAC
ATCATTGCCG AAGCCATGGA AAAAGTGACC AAAGACGGCG TTATCACCGT TGAAGAAGGT
TCGGGCCTGG AAAACGAGCT GTCTGTTGTA GAAGGCATGC AGTTTGACCG TGGTTACCTG
TCCCCGTACT TCATCAACAA GCCGGACACC ATGGTTGCCG AGCTGGACAG CCCGCTGCTG
TTGCTGGTCG ACAAGAAGAT CTCCAACATT CGCGAAATGC TGCCGGTTCT GGAAGCAGTC
GCCAAGGCTG GCCGTCCTCT GCTGATCGTT GCCGAAGACG TTGAAGGCGA AGCGCTGGCG
ACTCTGGTAG TCAACAACAT GCGCGGTATC GTGAAAGTTG CAGCCGTCAA GGCTCCAGGT
TTCGGCGATC GTCGCAAGGC CATGCTGCAG GACATCGCTG TTCTGACTGG CGGTACCGTT
ATCTCCGAAG AGATCGGCCT GAGCCTGGAA ACCACTACCC TGGAACACCT GGGTAATGCC
AAGCGCGTCA TCCTGAACAA GGAAAACACC ACCATCATCG ATGGTGCCGG CGTGAAAACC
GATATCGACT CGCGTATCTC CCAGATCCGT CAGCAAATCG GCGACACCAG CTCGGACTAC
GACAAGGAAA AACTGCAAGA GCGTCTGGCC AAGCTGTCTG GCGGCGTTGC AGTGATCAAG
GTCGGTGCCG GTTCCGAAGT CGAGATGAAA GAGAAGAAAG CCCGCGTTGA AGACGCCCTG
CACGCAACCC GCGCAGCCGT TGAAGAAGGC GTGGTACCTG GCGGTGGCGT GGCACTGGTT
CGCTCGCTGC AGGCTATCGA AGGTCTGAAA GGCGACAACG CTGATCAGGA CGTCGGTATC
GCTCTGCTGC GTCGTGCAGT CGAAGCGCCT CTGCGCCAGA TCGTTGCCAA CTCCGGTGAC
GAGCCAAGCG TTGTTGTCGA CAAGGTCAAG CAGGGTTCGG GTAACTACGG TTACAACGCT
GCTTCCGGCG AATACGGCGA CATGATCGAA ATGGGTATCC TTGACCCGGC CAAAGTGACT
CGCTCTGCTC TGCAGGCGGC GTCCTCCATC GCCAGCTTGA TGATCACCAC CGAAGCGATG
ATCGCTGACG TGCCTGAAGA CAAGCCAGCA GGCGGCGGCA TGCCGGACAT GGGCGGCATG
GGTGGTATGG GCGGCATGAT GTAA
|
|---|
| Protein sequence | MAAKEVKFGD SGRKKMLAGV NVLADAVKAT LGPKGRNVII EKSFGAPLIT KDGVSVAKEI
ELKDRFENMG AQLVKDVASR ANDDAGDGTT TATVLAQAIV NEGLKAVAAG MNPMDLKRGI
DKATIAIVAE LKKLSKPCTD TKAIAQVGTI SANSDHSIGD IIAEAMEKVT KDGVITVEEG
SGLENELSVV EGMQFDRGYL SPYFINKPDT MVAELDSPLL LLVDKKISNI REMLPVLEAV
AKAGRPLLIV AEDVEGEALA TLVVNNMRGI VKVAAVKAPG FGDRRKAMLQ DIAVLTGGTV
ISEEIGLSLE TTTLEHLGNA KRVILNKENT TIIDGAGVKT DIDSRISQIR QQIGDTSSDY
DKEKLQERLA KLSGGVAVIK VGAGSEVEMK EKKARVEDAL HATRAAVEEG VVPGGGVALV
RSLQAIEGLK GDNADQDVGI ALLRRAVEAP LRQIVANSGD EPSVVVDKVK QGSGNYGYNA
ASGEYGDMIE MGILDPAKVT RSALQAASSI ASLMITTEAM IADVPEDKPA GGGMPDMGGM
GGMGGMM
|
|---|
| |