| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4060 |
|---|
| Symbol | |
|---|
| ID | 3369596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 4842374 |
|---|
| End bp | 4844491 |
|---|
| Gene Length | 2118 bp |
|---|
| Protein Length | 705 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637654418 |
|---|
| Product | GGDEF |
|---|
| Protein accession | YP_237128 |
|---|
| Protein GI | 66047287 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGGGCCT GGTTTTTCGA GGGTCATGAG GCGATATGCC CTCCGACACG AACTAAGGAA
CGGCCATTGA AGCTGGAACT CAAGAACAGC CTGTCGGTAA AGCTGCTGCG CGTTGTGCTG
CTTTCGGCGC TTCTGGTGGG CGTCCTGCTC AGTTGTGCGC AAATCATCTT CGACGCCTAC
AAGACACGTC AGGCCGTGGC GAGCGATGCC GAGCGAATTC TCGGCATGTT CCGCGATCCT
TCGACACAGG CCGTCTACAG CCTGGACCGC GAGATGGGCA TGCAGGTCAT CGAAGGCCTG
TTCCAGGATG ACTCGGTACG CATGGCGTCC ATAGGGCACC CCAATGAAAG CCTGCTGGCC
GAGAAAGACC GGCCGCTGAA AGACTCCCCC ACCCGGTGGC TGACAGACCT CATCCTCGGC
CAGGAGCGCA GCTTCACCAC TCAACTGGTA GGCCGCAGCC CCTACAGCGA GTATTACGGC
GACCTGCGCA TCACTCTCGA CACTGCCAAT TACGGCGAAA GCTTTCTGGT CAATGCCGGC
ATCATCTTTG TCGCCGGCGT GCTGCGTGCG CTGGCAATGG GGCTGGTGCT GTATCTGGTC
TATCACTGGC TGCTGACCAA GCCGCTGTCA AAGATCATCG AGCACCTGAT CGCGATCAAC
CCCGACCGCC CCAGCGAACA CCAATTGCCG TTGCTCAAAG GCCACGAGAA AAACGAACTG
GGGATCTGGG TCAACACCGC CAACCAATTG CTGGCCTCCA TCGAGCGCCA CACTTATCTG
CGCCATGAGG CCGAGAACAA TCTGCAGCGC ATGGCGCAAT ACGATTTCCT CACCGGTCTG
CCCAATCGAC TTCAGTTGCA GACCGGGCTG GACAGGATTC TGGAAGATGC GGGGCGCCAG
CAACACAGAG TGGCGGTTCT TTGCGTGGGT CTGGATGACT TCAAGGGCAT CAACGAACAG
TTCAGCTACC AGTCCGGCGA TCAATTACTG CTCGCACTCG CTGACCGCCT GCGCGCGCAC
AGCGTACTGC TCGGCGCACT GGCGCGCCTG GGCGGCGACC AGTTCGCGCT GGTTCAGTCC
AACATCGAAC AGCCCTACGA GGCAGCAGAG CTGGCGCAGA ATATTCTCGA TGAGCTGGAG
GCACCGTTCA TTGTCGGTGA CCAGCAGATT CGACTGCGGG CAACCATCGG CATCACGCTG
TTTCCCGAAG ACGGCGACAG CACCGAGAAA CTGCTGCAGA AAGCCGAGCA GACCATGACG
CTGGCCAAAG CCCGCTCGCG TAACCGGTAT CAGTTCTACA TCGCCAGCGT GGACAGCGAA
ATGCGCCGCC GCCGCGAACT TGAAAAAGAC CTGCGCGAAG CCTTGCCACG CAATCAGCTG
TACCTGGTCT ATCAACCGCA GATCAGCTAC CGCGATCACC GTATCGTCGG AGTGGAAGCA
CTGATCCGCT GGCAGCATCC GGAGCATGGC CTGGTGCCGC CGGACGTATT CATCCCGCTG
GCCGAACAGA ACGGCACGAT CATCGTCATC GGAGAGTGGG TGCTGGATCA GGCCTGCCGT
CAGCTGCGCG AATGGCTCGA TCAGGGTTTC ACCGATTTGC GCATGGCCGT CAACCTGTCG
ACCGTGCAGC TGCATCACGC GGAACTGCCC CGCGTGGTCA ACAACCTGCT GCAGATCTAT
CGCTTGCCAC TGCGCAGCCT GGAACTGGAA GTGACCGAAA CCGGGCTGAT GGAAGATATC
AACACCGCCG CCCAGCACCT GTTGAGCTTG CGACGCTCCG GCGCCTTGAT TGCCATCGAT
GACTTCGGCA CCGGCTACTC ATCGCTGAGT TACCTGAAAA GCCTGCCGCT GGACAAGATC
AAGATTGACC GCAGCTTCGT GCAGGACCTG ATCGATGACG ACGATGACGC TACTATCGTG
CGAGCCATTA TCCAGCTGGG CAAAAGCCTG GGCATGCAAG TGATTGCCGA AGGTGTGGAG
ACCGTCGAGC AGGAGGCCTA TGTCGTGACC GAGGGCTGTC ACGAAGGCCA GGGCTATCTG
TACAGCAAGC CGCTGCCGGG TCGCGAACTG CTGGCTTATC TCAAGCAGTC GCGTCAGGAC
CACGCCGCCA GTCTGTGA
|
|---|
| Protein sequence | MRAWFFEGHE AICPPTRTKE RPLKLELKNS LSVKLLRVVL LSALLVGVLL SCAQIIFDAY
KTRQAVASDA ERILGMFRDP STQAVYSLDR EMGMQVIEGL FQDDSVRMAS IGHPNESLLA
EKDRPLKDSP TRWLTDLILG QERSFTTQLV GRSPYSEYYG DLRITLDTAN YGESFLVNAG
IIFVAGVLRA LAMGLVLYLV YHWLLTKPLS KIIEHLIAIN PDRPSEHQLP LLKGHEKNEL
GIWVNTANQL LASIERHTYL RHEAENNLQR MAQYDFLTGL PNRLQLQTGL DRILEDAGRQ
QHRVAVLCVG LDDFKGINEQ FSYQSGDQLL LALADRLRAH SVLLGALARL GGDQFALVQS
NIEQPYEAAE LAQNILDELE APFIVGDQQI RLRATIGITL FPEDGDSTEK LLQKAEQTMT
LAKARSRNRY QFYIASVDSE MRRRRELEKD LREALPRNQL YLVYQPQISY RDHRIVGVEA
LIRWQHPEHG LVPPDVFIPL AEQNGTIIVI GEWVLDQACR QLREWLDQGF TDLRMAVNLS
TVQLHHAELP RVVNNLLQIY RLPLRSLELE VTETGLMEDI NTAAQHLLSL RRSGALIAID
DFGTGYSSLS YLKSLPLDKI KIDRSFVQDL IDDDDDATIV RAIIQLGKSL GMQVIAEGVE
TVEQEAYVVT EGCHEGQGYL YSKPLPGREL LAYLKQSRQD HAASL
|
|---|
| |