| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4038 |
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| Symbol | |
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| ID | 3369574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 4822412 |
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| End bp | 4825057 |
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| Gene Length | 2646 bp |
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| Protein Length | 881 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637654396 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_237106 |
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| Protein GI | 66047265 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.23853 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACTA CCTTGCACCA ACACACACCT GATGTAAGAG CCGTTGACCC AAGAGGACTG
GCAATCGGCA ATATCGCTTA TTGGCGAAGC GAGGCGCAGC AAGCGATGGA GCGCCGTATT
ACACGGAAGA CTTACAACGC TGCGGGCCAT GTGAGCACGC AAAGAGATCC ACGACTTGAT
GCGCCAAACC TGACAACAAC TTACAGCCTT TCGGGGCAGC CGATACTGAT CGACAGTGTG
GACGCCCACT GGCGACTGCT GCTATTGGGA GAAGCAGGTC AGACCATCAG CGGCTGGGAC
AGTAACGCCA ATCAGCGTCA TTTTGAGTAC GATCCGTTGA TGCGCCCTGT TTCGGTTACC
GAGCAGCATC AGGTCGTTGA GCGTTTTGCC TATGGCGGAC CTGATTCAGC CAGCCATAAC
TTATGCGGTC GGCTATCGCG CCATGACGAC ACCGCCGGTA CAAGCCTGTC CCCGGACCAT
GGCCTGAGCG GCAAAGTACT TAATCAACAT AGATATTTCT TACGAGTATC AGTAACGCCG
GACTGGCCGC TGGCCGAAGC CGAGCGCGAT GCCTTGCTTG AGCCTGTCGT GCTGCAAACC
TGCTGGCGGT TCAATGCGCT GGGCGACGCG CTTGCGCAGA CCGATGCCAT GGGCAATACC
CAGGCATTTG GCATGACTGT CGCCGGACAG TTGAAAGCGG CTGGACTGAC ATTGGCCGGT
GCCTCACAGC CGCAGACACT GGTCAGTGCA ATTGACTATG ACGCATTCAA CCAGGTCGAG
CAGGAGACGG CAGGAAATGG CGTGGTCAGT CGCTATGTGT ATGATCTACA GGACGGTCGG
CTGATTGAAC TCAGTGCGCT ATCTGCTGAC GGCTCAGTGC TGCAAAAACT GAATTACAGC
TATGACCCGG CAGGTAACGT TCTACTCATC AACGATGCCT CGCAGCCAGA CCGGTATTGC
GACAACCAGC TTATCGAACC GATCAGCCGT TACCGTTACG ACACGTTGTA CCAGTTGATC
GAAGCCACGG GCCGGGAGGT CAGAAACGGG GCCAGCCATG GTCCGGCGCT GCCCGGTCTG
CAACCTGTCC CGACGCTCGA TCCTTGCCAG GTCAGCAACT ACAAACAGCA TTACAGCTAC
GACGCTGCGG GTAACCTGCT GCAAATGCGC CACGAAGGCG CGCGCAACTT TACCCGCAAC
ATGCACGTTG CACCGGACAG CAATCGCAGC CTGCCCGACG ATGACGGCGA TGTGGATTTC
GCCACGAGTT TTGATGCCAA CGGCAATCTG CTGCAACTGG TGCGTGGGCA GGTTATGGGC
TGGGATGTGC GTAACCAGTT GCAGCACATC ACCACTGTGC AACGTGAAGA CGGGTCGAGC
GATGACGAAC GCTATGTCTA TGACGGCCAA GGTCAGCGTT GTCGCAAGAT CAGTACTGCT
CAGGCATCAG GTCGCATGCT GATCAACGAA GTGCGCTACC TGCCGGGGCT GGAAATTCGT
ACTACGGCCG ATGGCGAAAT CCTCCATGTC ATCACCGCTC AGGCGGGTCG CAATAGTGTG
CGAGTGTTGC ACTGGAAAGC CGGAAAACCG GGCATTATTA CGAACGATCA GGTGCGTTAC
AGCCTGGGTG ATCATCTGGG CTCGAGCACG CTGGAACTGG ATCAGCAAGG CGGCCTGATC
AGCCAGGAAA GCTATTACCC TTTCGGCGGC ACGGCCTGGT GGGCGGCGCG CAGCGCAGTG
GAAGCGAAGT ACAAGACCGT GCGTTATTCG GGCAAGGAGC GCGACGCCAG CGGGCTTTAT
TACTACGGGT TCAGGTATTA CGCGCCGTGG TTGCAGCGGT GGATCAGTCC GGATCCGGCG
GGGGATGTGG ATGGGTTGAA TCTGTACGGG TACGTAAAAA ACAGTCCAAT CACCTATTAC
GACAGGTTGG GATACATGGG GAAGCACGCG CTTGAGTCGC CGCCATCACC CGCTCGTCGA
AAACCGATAA CCTCAAATAG CTATGCCCTT GAAAATCAAG ATGCGAGACC CGGTGTTTTG
TGGGGCGATC AGGAGCCATT CCTCGGACCT GCTTACACAT TACCAGACAG ATATCTTGTT
TCCGGATTGG AAGAAAGATT GGCCGCAGTT GATAAACGTT CCGGCGAGGC GACCGCTATC
GTAGCGACGA TGTTTGACCA TAACAGCAGC TTGGCATACG GCCCCTACGT CGTAGAATCA
AAGCATCTTC AAAAAGAGGA CGACTTCCTC AACGAATACG CGCCCAACGA ATGGACCTTT
CGTTCAAATT ACAAAAGAAG CGGAAGCAAT GACTACCATG CCAATGACGT AGTCCGATAC
CAGTATAGAA CCATCGCCCA AAAAACAAAT ACCCATGGCG TTTTACCTTC GGTTATAAAA
AATAGCTTCG TCGTGAATAA TGAGACGTTG ACGAAAACTT TGACAATAGA AAACAAAACT
CCGGAAATGC TACAGACTTT TCTTCAGGAA ACGCCCAACG GCAAGCGAAC TCAACGAGTA
CTTGACGACT TTGGCATGGA GGCTTTATGG GTTGATCGGC AGGGGGACTC AGAATTCCCC
TTCGCTGACT TTATTGTTGC TGTACGCCCT AAACAGCAAT CATATAGCCA GACTGGCTTT
TACTAG
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| Protein sequence | MNTTLHQHTP DVRAVDPRGL AIGNIAYWRS EAQQAMERRI TRKTYNAAGH VSTQRDPRLD
APNLTTTYSL SGQPILIDSV DAHWRLLLLG EAGQTISGWD SNANQRHFEY DPLMRPVSVT
EQHQVVERFA YGGPDSASHN LCGRLSRHDD TAGTSLSPDH GLSGKVLNQH RYFLRVSVTP
DWPLAEAERD ALLEPVVLQT CWRFNALGDA LAQTDAMGNT QAFGMTVAGQ LKAAGLTLAG
ASQPQTLVSA IDYDAFNQVE QETAGNGVVS RYVYDLQDGR LIELSALSAD GSVLQKLNYS
YDPAGNVLLI NDASQPDRYC DNQLIEPISR YRYDTLYQLI EATGREVRNG ASHGPALPGL
QPVPTLDPCQ VSNYKQHYSY DAAGNLLQMR HEGARNFTRN MHVAPDSNRS LPDDDGDVDF
ATSFDANGNL LQLVRGQVMG WDVRNQLQHI TTVQREDGSS DDERYVYDGQ GQRCRKISTA
QASGRMLINE VRYLPGLEIR TTADGEILHV ITAQAGRNSV RVLHWKAGKP GIITNDQVRY
SLGDHLGSST LELDQQGGLI SQESYYPFGG TAWWAARSAV EAKYKTVRYS GKERDASGLY
YYGFRYYAPW LQRWISPDPA GDVDGLNLYG YVKNSPITYY DRLGYMGKHA LESPPSPARR
KPITSNSYAL ENQDARPGVL WGDQEPFLGP AYTLPDRYLV SGLEERLAAV DKRSGEATAI
VATMFDHNSS LAYGPYVVES KHLQKEDDFL NEYAPNEWTF RSNYKRSGSN DYHANDVVRY
QYRTIAQKTN THGVLPSVIK NSFVVNNETL TKTLTIENKT PEMLQTFLQE TPNGKRTQRV
LDDFGMEALW VDRQGDSEFP FADFIVAVRP KQQSYSQTGF Y
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