| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4037 |
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| Symbol | |
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| ID | 3369573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 4819501 |
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| End bp | 4822368 |
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| Gene Length | 2868 bp |
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| Protein Length | 955 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637654395 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_237105 |
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| Protein GI | 66047264 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0688366 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCAGTA GCGCGGTACA TGCCCATACG CCGGAGTTGA TCGTTTGCGA GGGTCGTGGC
CTGGTTGTGC GCCAGGTCCT TTTACATCGA ACCGAAGCGA CGGAAGCGGC CGCAATGCGG
GTTACCCGAC AGCGTTTCGA CCCGGCAGGC AGAATGATCG CCGCCACTGA TCCACGTCTG
GCCAGCGCCA ACCGGAGCAC TGTCTACAGC CTTGGCGGCA ACGCGTTGGC CACTGAGAGT
GTCGATGCCG GCTGGCAACG GGTGTTATTC GGCGAGGCGG GCCAGGTCTT GCGCGACTGG
GATGGTCGCG GCACCGAGAA GCAGCTCGAG TACGACCTGC ACCTGCGCCC GACAAGGATC
ATCGAACAGA ATCGGTGTGC GGAGCGGTTC ACCTATGGCC AGGCAGGTGC AGCAGCACAC
AACCAATGCA ATCAACTGGT TCGTCATGAC GATACGGCGG GCTCGCGCTT GCTGGCAGAT
TACGGGCTGC TCGGCGTAGC GCTTTGTGAA GAACGACAGT TCCTGAAAAC CCCTGAAAGC
CCGGACTGGC CGCTGGCCGA AGCCGAGCGC GATGCCTTGC TTGAGCCTGT CGTGCTGCAA
ACCTGCTGGC GGTTCAATGC GCTGGGCGAC GCGCTTGCGC AGACCGATGC CATGGGCAAT
ACCCAGGCAT CAGGCATGAC TGTCGCCGGG CAGTTGAAAG CGGCTGAACT GACCCTGACC
AATACGGCAC AGCCGCAAAC GCTGGTCAGT GCAATTCACT ATGACGCATT CAACCAGGTC
GAGCAGGAGA CGGCAGAAAA TGGCGTGGTC AGCCTTTATT CCTATGATCA ACAGGACGGC
CGACTGACCG GGCTGAGCGC GATATCTGCT GACGGCACGC TGCTGCAGCA ACTCAATTAC
AGCTATGACC CGGTGGGCAA TATCCTGCTC GTCAACGATG CGTCTCAACC GGACCGGTAT
TGCGACAACC AGCTTATCGA ACCGATCAGT CGCTTTGCTT ACGACACGCT GTATCAACTG
ATCGAAGCCA GCGGCCGTGA AGTCCGAAAC GGTGCCAGCC ATGGCCCCGC GTTGCCCGGG
CTGCAATCTC TGCCAACCAT CGATCCTTGC CAGGTCAGCA ACTACACGCA GAGTTACAGC
TACGACGCTG CGGGTAACCT GCTGCAAATG CGCCACGAAG GCGCGCACAA CTTCACCCGC
AACATGCACG TTGCACCGGA CAGCAATCGC AGCCTGCCCG ACGATGACGG GGATGTGGAT
TTCGCCACGA GTTTTGATGC CAACGGCAAT CTGCTGCAGT TGGTACGTGG CCAGGCGCTG
CGCTGGAATG CGCGCAATGA GTTGCAGCTG ATCACCACTG TTGTACGTGC CGAAGACCCT
AATGACAGCG AGACTTACAT CTACGACGGC CAAGGCAAGC GCTGCCGCAA GATCACAAGT
GCTCAGGCGC ACAATCGCAC GCTGCTTGAC GAAGTGCGCT ACTTGCCAGG TCTGGAAATC
CGTACCCGCG CCGATGGCGA AATCCTCCAT GTCATCACCG CTCAGGCGGG TCGCAATAGT
GTGCGAGTGT TGCACTGGGA AGCCGGAAAG CCAGGCGCTA TTGCGAACGA TCAGGTGCGT
TACAGCCTGG GTGATCATCT GGGCTCGAGC ACGCTGGAAC TGGATCAGCA AGGCGGCCTG
ATCAGCCAGG AAAGTTATTA TCCGTTCGGC GGAACGGCCT GGTGGGCGGC GCGCAGCGCA
GTGGAAGCGA AGTACAAGAC CGTGCGTTAT TCGGGCAAGG AGCGCGACGC CAGCGGGCTT
TATTATTACG GGTTCAGGTA TTACGCGCCG TGGTTGCAGC GGTGGATCAA TCCGGACCCG
GCGGGGGATG TGGATGGGTT GAATCTGTTC GGCTTTGTTG GCAACAACCC ACTCAACTTA
TTTGACCCCG ACGGTCAGAG CAGTCAAAAG GCCAGGGCGC GCTGGTTGAC GGCGATGGAT
ATCCTGCGCG AGCAAAGGGA TACGAACGAC GTGAGTGTCA GAACGCTTGC GCCAGGCGTA
ATCGGCGTGA GTATCCAGGG CACCAATGAA ACCTTCGCGC AAATAGGGAT GGGGTTGCCC
AGAGCGTTTG AAGGCCGGCG AGAACTTACT TACCTGTCCA TCGACTCTAC CTACCGGAGC
AAGGTTTCAG GAGGCAGCTA CCCCTTCGCT ATAAAGTCCG CGTCCGGCGC TGCTATTTAT
GTAGAGGCAG AAGTACCTGG CAGTAGTCAC CTGGCATTCA TAAATGGCGG CTTCTATAAC
TTTAAAGGTA GAGCTTCACA ATCAGATCCA CCACACGCCG CGGTTGGGAA GTTGTTCATG
GGTGGCGAGG AGGAAGCATC TGTCAGCATT CCACGGCCTT ACGAAAAAGA TTACGTTGCG
CTGACCATGG GGGATGGCTC CACTCTTCAC TCGGCACCAC TGCTGTCTAC CGGGGGAGAA
GTGGCTTTCA CCGAAAGCCA TCTTGAGCAG GGAAGGTTTC AATATGGATC GGCCACATCA
GGGCCGGGCC AATTAGGTCA TGCCAACACG CCCAATCAAC GTTCGGGTAT CAGCTTTCCG
GTTGTTTTCG ACGGATCATC AAGAACGCGT CTGGCCGTCG GGTTAGGCGG AAGCAGAACC
CAGGAGTCCA GAGCTTACAC GATGCCGGAA TGGGCGAAGA TCATGGTAAG GCTGGACAAA
CTGAACGCCA CACCTGGATG GTCTGCCAAT CTCGACGGCG GCGATAGCGT GGCGCTGGGG
ATAGTCTCCC GCTCAGGCGA AATCATCATG GATCAATCGG CCAGAGGCAG CCCTCGGCGA
GGGATAGGTA ACTTCCTGAC TTTTTATAAA TCCAGTTTTC CAGGGTGA
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| Protein sequence | MVSSAVHAHT PELIVCEGRG LVVRQVLLHR TEATEAAAMR VTRQRFDPAG RMIAATDPRL
ASANRSTVYS LGGNALATES VDAGWQRVLF GEAGQVLRDW DGRGTEKQLE YDLHLRPTRI
IEQNRCAERF TYGQAGAAAH NQCNQLVRHD DTAGSRLLAD YGLLGVALCE ERQFLKTPES
PDWPLAEAER DALLEPVVLQ TCWRFNALGD ALAQTDAMGN TQASGMTVAG QLKAAELTLT
NTAQPQTLVS AIHYDAFNQV EQETAENGVV SLYSYDQQDG RLTGLSAISA DGTLLQQLNY
SYDPVGNILL VNDASQPDRY CDNQLIEPIS RFAYDTLYQL IEASGREVRN GASHGPALPG
LQSLPTIDPC QVSNYTQSYS YDAAGNLLQM RHEGAHNFTR NMHVAPDSNR SLPDDDGDVD
FATSFDANGN LLQLVRGQAL RWNARNELQL ITTVVRAEDP NDSETYIYDG QGKRCRKITS
AQAHNRTLLD EVRYLPGLEI RTRADGEILH VITAQAGRNS VRVLHWEAGK PGAIANDQVR
YSLGDHLGSS TLELDQQGGL ISQESYYPFG GTAWWAARSA VEAKYKTVRY SGKERDASGL
YYYGFRYYAP WLQRWINPDP AGDVDGLNLF GFVGNNPLNL FDPDGQSSQK ARARWLTAMD
ILREQRDTND VSVRTLAPGV IGVSIQGTNE TFAQIGMGLP RAFEGRRELT YLSIDSTYRS
KVSGGSYPFA IKSASGAAIY VEAEVPGSSH LAFINGGFYN FKGRASQSDP PHAAVGKLFM
GGEEEASVSI PRPYEKDYVA LTMGDGSTLH SAPLLSTGGE VAFTESHLEQ GRFQYGSATS
GPGQLGHANT PNQRSGISFP VVFDGSSRTR LAVGLGGSRT QESRAYTMPE WAKIMVRLDK
LNATPGWSAN LDGGDSVALG IVSRSGEIIM DQSARGSPRR GIGNFLTFYK SSFPG
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