| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4009 |
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| Symbol | |
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| ID | 3369545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 4775378 |
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| End bp | 4776838 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637654367 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_237077 |
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| Protein GI | 66047236 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0874069 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0174443 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGT CATTGATCTC ACTTGCAGTT ACCGCGTTCA TTCTCGGCGG CTGCTCTTTG
ATCCCCGATT ACAAGCAGCC GCAAGCACCG GTCGCGGCAC AATATCCGCA AGGGCCGGCG
TACTCGCCGG TCGAAGGCGC CAAAATGGCC GCCGCGGAGC AAGGCTGGCG GCACTTCTTC
AATGACCCGG CGCTGCAACA GCTGATTCAG ACTGCACTGC TCAACAACCG TGACCTGCGG
GTTGCGGCGC TGAACATCGA CGCCTACCGC GCCCAGTACC GTATCCAGCG CTCGGACCTG
TTCCCTGCTG TTTCGGCCAC CGGTAGCGGC TCACGTCAGC GCGTGCCGGG TGATCAGTCG
CAGACCGGTC AGCCAGGCAT CACCAGCAGC TACTCGGCCA CCCTGGGTGT CAGCTCGTAC
GAGCTGGACC TCTTCGGCCG GGTCCGCAGC CTCAGCGAGC AGGCGCTGGA GACCTACTTC
GCCAGCGAGG AAGCGCGTCG CAGCACCCAG ATCAGTCTGG TGGCCAGCGT CGCCAATGCC
TACATGACCT GGCAGGCCGA CAAGGAACTG CTCAAGCTGA CGCAGGACAC CCTGAAGACC
TACGAAGAAA GCTTCCGTCT GACCTCGCGC GCCAGCGAAG TCGGCGTTTC TTCGGCACTG
GACCTGAGCC AGTCGCGCAC CGCCGTCGAA AGCGCGCGCG CCAAACTGGC CCAGTACCAG
CGCCTGGTTG CCCAGGATCA GAACAGCCTG GTGCTGCTGC TTGGCACCAG CCTGCCCGAC
AACCTGCCGG CCAGCCACTT GCTCGATTCC GACATGCTGA CCGAAATGCC GGCAGGCCTG
CCGTCCGACC TGCTGCAGCG TCGTCCGGAC ATTCTCGAGG CCGAGCACTC GCTCAAGGCG
GCCAACGCCA ACATCGGCGC GGCACGTGCA GCGTTCTTCC CGAGCATCAG CCTGACGGCC
AGTGCCGGGA CCAGCAGCAG CGAGCTGTCC GGCCTGTTCA AGGGCGGATC GGGCGCCTGG
CTGTTCCAGC CAAGCATCAA CATCCCGATC TTCAACGCCG GCAACCTGCG CGCCAGCCTG
GACTACTCGA AAATCCAGAA GGAAATCAGC GTCGCCAACT ACGAGAAGGC GATTCAGACC
GCCTTCCAGG AAGTGTCCGA CGGCCTGGCT TCACGCAAGA CCTATGACGA GCAGCTCCAG
GCGCAACGTG ACTTCGTTGC GGCCAACCAG GATTACTACC GTCTGGCCGA ACGTCGCTAC
CGGATCGGCA TCGACAGCAA CCTGACCTTC CTCGACGCCC AGCGCTCGCT GTTCAGTGCG
CAACAAACGC TGATCACCGA TCGCCTGTCG CAGCTGACCA GCGAGGTCAA CCTGTACAAG
GCCCTCGGCG GCGGCTGGTA TGAAAGAACC GGGCAGACCG AAACCATCTC CAAGGAGAAG
CCTTCGGTTC AGTTGTTCTG A
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| Protein sequence | MSKSLISLAV TAFILGGCSL IPDYKQPQAP VAAQYPQGPA YSPVEGAKMA AAEQGWRHFF
NDPALQQLIQ TALLNNRDLR VAALNIDAYR AQYRIQRSDL FPAVSATGSG SRQRVPGDQS
QTGQPGITSS YSATLGVSSY ELDLFGRVRS LSEQALETYF ASEEARRSTQ ISLVASVANA
YMTWQADKEL LKLTQDTLKT YEESFRLTSR ASEVGVSSAL DLSQSRTAVE SARAKLAQYQ
RLVAQDQNSL VLLLGTSLPD NLPASHLLDS DMLTEMPAGL PSDLLQRRPD ILEAEHSLKA
ANANIGAARA AFFPSISLTA SAGTSSSELS GLFKGGSGAW LFQPSINIPI FNAGNLRASL
DYSKIQKEIS VANYEKAIQT AFQEVSDGLA SRKTYDEQLQ AQRDFVAANQ DYYRLAERRY
RIGIDSNLTF LDAQRSLFSA QQTLITDRLS QLTSEVNLYK ALGGGWYERT GQTETISKEK
PSVQLF
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