| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4007 |
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| Symbol | |
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| ID | 3369543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 4771083 |
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| End bp | 4772243 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637654365 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_237075 |
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| Protein GI | 66047234 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.430649 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0665893 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATTCA AGCCAGCTGT TACCGTTCTG GTCACTGCCA TCGCCCTGGC AACCCTGCTC
AGTGGCTGTA GCAAGAAGGA ACAGGCCGCC CCGCCTGCGC AAACCCCTCA GGTAGGCGTC
GTTACCATCA AAGCACAGCC CTATACCCTG ACCACCGAGC TGCCGGGCCG GACCACCGCC
TTCCGCGTCG CCGAGGTTCG CCCTCAGGTC AACGGCATCA TTCTCAAGCG TCTGTTCACC
GAAGGTGGCG ATGTCAAAGC CGGTCAGCAG CTCTACCAGA TCGACCCGGC TGTCTATGAA
GCCAACGCCA ACAGCGCCAA GGCCACCCTG CAGTCCGCCA AGTCGATGTC CGATCGCTAC
AAGCAACTGG TCAGCGAGCA GGCAGTGAGC CGTCAGGAGT ACGACACGGC GCTGGCATCG
ACCCAGGAAG CTCAGGCAGC CCTGCAGACC GCCCAGATCA ACCTGCGCTA CACCAAGGTG
CTGGCACCTA TTTCCGGTCG TATCGGTCGC TCCGCGGTGA CGGAAGGCGC ACTGGTGAGC
AGCGCACAGA CCGATGCGAT GGCAACCATC CAGCAACTCG ACCCGATCTA TGTCGACGTG
GTGCAGTCAT CTGCCGACAT GCTCAAGCTG CGCAGCGACC TGGATAGCGG CAAACTGCAG
AAAGCCGGCG ACAACGCGGC CAAGGTCAAG CTGACCCTGG AAGACAACAG CGTCTACGCC
CAGGAAGGCA AACTGGAGTT CTCCGAAGTA TCGGTTGACC AGACCACCGG CTCCGTGACC
CTGCGTGCCG TGTTCCCGAA CCCTGAACAC CGCCTGCTGC CGGGCATGTT CGTTCATGCG
CAGTTGCAGG CTGGCGTCAA TTCGAAAGCC ATCCTCGCAC CGCAGCAAGG CGTAACCCGC
GACCTGAAAG GCACGCCGAC CGCCATGGTC GTCAATCAGG ACAACAAGGT TGAAATGCGT
ACGCTGGTGG CCAATCGCAC CGTGGGCAGC GACTGGCTGA TCGAAGACGG CCTGAAAGAA
GGTGATCGCG TCATCACCGA AGGCCTGCAG TACGTCAAAC CAGGCGCCGA AGTGAAAGTC
GCCGAAGCGA CCAACGTCAA AGGAGCAAAC CCGGCACCTG CCCCGGCCAC TGATAAAGCC
GCAGGCAGCA AAGGGGAGTA A
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| Protein sequence | MQFKPAVTVL VTAIALATLL SGCSKKEQAA PPAQTPQVGV VTIKAQPYTL TTELPGRTTA
FRVAEVRPQV NGIILKRLFT EGGDVKAGQQ LYQIDPAVYE ANANSAKATL QSAKSMSDRY
KQLVSEQAVS RQEYDTALAS TQEAQAALQT AQINLRYTKV LAPISGRIGR SAVTEGALVS
SAQTDAMATI QQLDPIYVDV VQSSADMLKL RSDLDSGKLQ KAGDNAAKVK LTLEDNSVYA
QEGKLEFSEV SVDQTTGSVT LRAVFPNPEH RLLPGMFVHA QLQAGVNSKA ILAPQQGVTR
DLKGTPTAMV VNQDNKVEMR TLVANRTVGS DWLIEDGLKE GDRVITEGLQ YVKPGAEVKV
AEATNVKGAN PAPAPATDKA AGSKGE
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