| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3958 |
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| Symbol | algU |
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| ID | 3369493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 4706018 |
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| End bp | 4706599 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637654315 |
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| Product | RNA polymerase sigma factor AlgU |
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| Protein accession | YP_237026 |
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| Protein GI | 66047185 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0486119 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTAACCC AGGAAGAGGA TCAGCAGCTT GTCGAGCGCG TACAGCGTGG CGATACGCGA
GCATTTGATC TGTTGGTGCT GAAGTATCAG CACAAAATTC TAGGGTTGAT CGTGCGATTC
GTGCACGACA CCCATGAGGC TCAAGACGTT GCACAGGAAG CCTTTATCAA GGCTTACCGT
GCTCTCGGAA ATTTTCGCGG TGACAGTGCT TTCTACACGT GGCTGTATCG CATCGCCATT
AACACGGCGA AGAACTATCT GGTCTCGCGA GGTCGGCGAC CACCGGATAG CGATGTAAGG
TCTGAAGACG CGGAGTTCTA CGACGGCGAC CACGGCCTCA AGGACATCGA GTCGCCGGAG
CGTGCATTGT TGAGGGATGA GATCGAAGGC ACCGTCCATC GGACCATCCA GCTTCTCCCG
GAAGATTTAC GTACGGCACT AACTTTACGT GAATTCGATG GTCTGAGTTA TGAAGACATT
GCGAGCGTCA TGCAGTGTCC TGTTGGTACC GTGCGCTCTC GGATCTTCCG CGCTCGGGAA
GCCATCGATA AAGCCCTGCA GCCGTTGTTG CAGGAATCCT GA
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| Protein sequence | MLTQEEDQQL VERVQRGDTR AFDLLVLKYQ HKILGLIVRF VHDTHEAQDV AQEAFIKAYR
ALGNFRGDSA FYTWLYRIAI NTAKNYLVSR GRRPPDSDVR SEDAEFYDGD HGLKDIESPE
RALLRDEIEG TVHRTIQLLP EDLRTALTLR EFDGLSYEDI ASVMQCPVGT VRSRIFRARE
AIDKALQPLL QES
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