Gene Psyr_3955 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_3955 
Symbol 
ID3369490 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp4702696 
End bp4704141 
Gene Length1446 bp 
Protein Length481 aa 
Translation table11 
GC content61% 
IMG OID637654312 
Productpeptidase S1, chymotrypsin:PDZ/DHR/GLGF 
Protein accessionYP_237023 
Protein GI66047182 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGATAC CACGCATGAA ATCCTACTTT TCATTGATTG CCGCTGTGCT GATGCTCGGT 
CAGGTTGCTA CGGCTCAGGC CGAAAACCTG CCGGACTTCA CCGGGCTGGT CGAGCAGGCA
TCGCCCGCAG TGGTGAATAT CAGTACGCGC CAGAAGTTGC CGGACCGTGC CGTCGCCAAT
CAGCAGATGC CTGATCTGGA AGGCCTGCCG CCGATGCTTC GCGAGTTTCT CGAGCGCAGC
ATGCCGCCAG GTTCGCGTCC GCCGGGCTCG GGTGCAGGCA AGGGTGATCG CCAGCGTGAG
GCTCAGTCCC TCGGCTCGGG CTTCATCATC TCCCCTGACG GCTACGTGCT GACCAACAAT
CATGTAATCG ATGGTGCTGA TGAGATTCTC GTACGCCTGT CCGATCGCAG CGAGTTGAAG
GCCAAACTGG TCGGTACCGA TCCGCGTACC GACGTTGCCG TTCTGAAGAT TGAGGGCAAG
GACCTGCCAA CCGCCAAACT GGGCAATTCC AATACGCTCA AGGTCGGTGA ATGGGTTCTG
GCGATCGGCT CGCCGTTCGG TTTCGATCAC TCCGTGACCA AGGGTATCGT CAGTGCCAAG
GGGCGCAGCC TGCCTAACGA CACCTACGTG CCGTTCATTC AGACCGACGT GGCCATCAAC
CCGGGTAACT CCGGTGGCCC GCTGTTCAAC ATGGCTGGCG AGGTCGTCGG GATCAACTCG
CAGATCTTCA CGCGTTCCGG TGGTTTCATG GGCCTGTCGT TCGCGATTCC GATCGACGTC
GCCATGGATG TGGCCAACCA GCTCAAGGCC AACGGCAAAG TCAGCCGCGG CTGGCTGGGT
GTGGTCATCC AGGAAGTGAA CAAGGACCTT GCCGAGTCGT TTGGTCTGGA CAAGCCTGCC
GGCGCGCTGG TTGCGCAAGT GCTTGAAGAC GGCCCGGCTG CCAAGGGCGG TGTGCAGGTG
GGTGACGTGA TTCTGAGCGC CAACGGCCAG CCCATCGTCA TGTCGGCCGA CCTGCCGCAC
CTGATCGGCA ACCTCAAGGA CGGCAGCAAG GCCGAACTTG AAGTGATTCG CGACGGCAAG
CGTCAGAAGC TGACGGTCAC CGTCGGCGCG CTGCCTGATG AAGGTCAGGA AATGGGCGAT
GTTGGCGGTA CGGGTGCCGA GCGCAGCAGT AATCGTCTGG GCGTATCGGT GATCGAGCTG
ACCGCCGAGC AGAAGAAATC CCTGGACCTC AAAGGTGGCG TTGCCATCAA GGAAGTCACC
GGCGGCCCGG CTTCGCTGAT CGGTCTGCAG GCGGGTGATG TGATCACTCA CCTGAACAAT
CAGGCGATCA CGTCCAGCAA GCAGTTCACC GAGGTGGCGA AAAGCCTGCC CAAGGATCGC
TCTGTCTCGA TGCGTGTTCT GCGTCAGGGC CGTGCGACCT TCATCACCTT TAAGCTGTCC
GAGTAA
 
Protein sequence
MSIPRMKSYF SLIAAVLMLG QVATAQAENL PDFTGLVEQA SPAVVNISTR QKLPDRAVAN 
QQMPDLEGLP PMLREFLERS MPPGSRPPGS GAGKGDRQRE AQSLGSGFII SPDGYVLTNN
HVIDGADEIL VRLSDRSELK AKLVGTDPRT DVAVLKIEGK DLPTAKLGNS NTLKVGEWVL
AIGSPFGFDH SVTKGIVSAK GRSLPNDTYV PFIQTDVAIN PGNSGGPLFN MAGEVVGINS
QIFTRSGGFM GLSFAIPIDV AMDVANQLKA NGKVSRGWLG VVIQEVNKDL AESFGLDKPA
GALVAQVLED GPAAKGGVQV GDVILSANGQ PIVMSADLPH LIGNLKDGSK AELEVIRDGK
RQKLTVTVGA LPDEGQEMGD VGGTGAERSS NRLGVSVIEL TAEQKKSLDL KGGVAIKEVT
GGPASLIGLQ AGDVITHLNN QAITSSKQFT EVAKSLPKDR SVSMRVLRQG RATFITFKLS
E