| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3942 |
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| Symbol | |
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| ID | 3369477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 4688223 |
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| End bp | 4690577 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637654299 |
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| Product | GGDEF |
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| Protein accession | YP_237010 |
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| Protein GI | 66047169 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0583241 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00556538 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATTTA AAGCCAGCTT TCAGGCGCGC ATCGCCGGGG TTCTGATTGT CCTGTTGCTG
ATTGTCGTGA GTGCAGTTTA TCTCGCCGTC AAGGTTGCAA CGGGCGATGC GGTGCGTACT
CAGGCCCAGG CACAACTGGA AGTGGGTAGC CGCGTGTTCG AACGGCTGAT CGATCTGCGC
GGCAAACGTC TGCGTGACAC GGTGCAGTTG GTGGCCGCCG ATTTTGGCTT TCGCGACGCC
GTGGCCAGTG CCGATTCCTC GACCATTCGC TCGGTGTTGC TCAACCATGG CAAACGCATC
AACGCCAGCG ACATGTTCCT GCTGGGCATG GATGGCGTGG TGATTGCCAG CACCGTGCCG
AAAGTCCCCG AGGGTTCCAG ATTTGTCTAT GACCAGGCCC TGCGCAACGC CAAACGTGCC
GGTCAGTCAG TGCTCATTGT GCCCGGCGGC GGAGACCCTC ATTTGCTGGT GGAGGCCACC
GTTCTCGCGC CATTGCCGAT CGGCCGCGTG GTCATGGGCT TTACCATCGA CAGCGATATT
GCCGAAGAAC TGCGTTCGCT CAGCGGTCTG GAAGTGTCTT TTCTCACCGT AGAAGACGGT
AAGACCGGTG ATCTGATCAG TACCCAGCCA GCGGCCCTGC ACGCGGGTTT GATCGAGCTG
ATGCGCAGCT CCTCGGAAGG CCAGATGTTG CTGACCGAGC AATCGAACCT TAACTTTCTC
AGTCAGACCC TGATGCTCGC CAACACCAGC AATGGCGGCG ACGGTCAGGT CATCGCGCTG
TTGCAGAGCC CTCTGGACAA GGCCTATCAG GCATTCGCGC CACTGAATCA AAAGATTTTC
TGGATTTCCA TGGCCGCCCT GGTGGCCTCG CTGATCGGCA CACTGGCGCT GGCGCGAAGC
GTCTCGCTGC CGGTACGGGC CCTGGCCACG GCGGCCAAAC GTATTGGTGA TGGCGACTAT
AAAACGCCGG TCGCGCTGGT GCGTAGCGAT GAACTCGGCA TGCTCGCCGA CGCGATCAAC
ACCATGCAGC AGGGCATTGC CGTGCGCGAG GGGCAATTGG CCCACAACGC CCTGCACGAC
AATCTGACCG GGCTGCCCAA CCGGGCGCTG GTGATGGAGC GTCTGGGCAG TTCGATTGCG
GCACATCGCG GGGTTGCCCT GTTGTCTCTG AGCATCGAGA ACCTCGCCAC GATCAGCGAA
AGCGTGAGCG CCGAAGGTGT TGACCAGTTG TTACGGCAGG CGGGTCAGCG CCTGCAAGGT
AATCTGCGCG CCGGCGATAC CGTGGCCCGT CTGGGGGCCA ACGAGTTTCT GCTGTTGCTG
GACAACATTG CCAGCGATGG TGCGGTGGGC ATGGCAGACG CTGTGCAGCG TCTGCTCAGT
GAGCCGCAGC GTATCGACAA TCATGAGCTG GAGCTTGAGT GCTGCATTGG TATCACGGTG
TACCCGGAAC ACGGTGATTC CGCCCAGGAA TTGCTCAGCC GTGCGGCAAT TGCCCGCAAG
GATGCCACGT TCCTTCCCGG TCGCCTGCAG ATCTATCAGG ATGGACGTGA CCTGGCCCAC
CAGCGGCAGA TCACGCTCAT TCGTGACCTG CGCAAGGCCG CGCAGAATGG CGAACTATCG
CTGCATTACC AGCCCAAGCT GGATATTCGT CAGGGCTATG TGCGTCAGGC CGAAGCGTTG
TTGCGCTGGG CTCATCCGCA GTTCGGCAGT GTCTCGCCCG CCGAATTCAT CGTCCTCGCC
GAGCGCACCG GAAGCATTTA CCTGCTGACC AACTGGGTGA TCGAAGAGGC AATGCGCCAG
TTGGCCGTAT GGCGCCAGCG CGGTCTGGTC CTGCAGGTAT CGGTGAACAT TTCCGCTGAT
GACCTGCTGG GTGATGACCT GGTCGGCTAT GTCGTGAAAC TGCTCAAGCA ATACGCCGTG
CCTGCCGAAC AACTGTTATT CGAGATCACC GAAAGTGCAG TCATGAGCGA ACCGGAAAAG
GCACTGATCG TCCTGCATCG CCTGCGCGAT TGCGGCATCA GCCTGTCGAT CGACGATTTC
GGTACCGGTT ACTCGTCATT GGCGCACTTG AAGCGTCTGC CCGTGCAGGA GCTGAAAATC
GATCAGTCTT TCGTGCGCAA CCTGGATGAA ACCAGTGAAG ACGCAGTGAT CGTGCGGTCG
ACCATTGAAA TGAGCCACAA CCTCGGACTG AAGGTGGTGG CAGAGGGTGT CGAGTACCAA
CACAGCCTGG ACCTGCTCCG GCGTTGGCAC TGCGATACGG CCCAGGGTTA CCTGATCAGT
CGACCGCTGA CCGCGTCGGC ATTCGAGGCA TGGATTGCCA CGTACCAGGC GTCACCCGGT
CTTATGGTGA ATTAA
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| Protein sequence | MKFKASFQAR IAGVLIVLLL IVVSAVYLAV KVATGDAVRT QAQAQLEVGS RVFERLIDLR
GKRLRDTVQL VAADFGFRDA VASADSSTIR SVLLNHGKRI NASDMFLLGM DGVVIASTVP
KVPEGSRFVY DQALRNAKRA GQSVLIVPGG GDPHLLVEAT VLAPLPIGRV VMGFTIDSDI
AEELRSLSGL EVSFLTVEDG KTGDLISTQP AALHAGLIEL MRSSSEGQML LTEQSNLNFL
SQTLMLANTS NGGDGQVIAL LQSPLDKAYQ AFAPLNQKIF WISMAALVAS LIGTLALARS
VSLPVRALAT AAKRIGDGDY KTPVALVRSD ELGMLADAIN TMQQGIAVRE GQLAHNALHD
NLTGLPNRAL VMERLGSSIA AHRGVALLSL SIENLATISE SVSAEGVDQL LRQAGQRLQG
NLRAGDTVAR LGANEFLLLL DNIASDGAVG MADAVQRLLS EPQRIDNHEL ELECCIGITV
YPEHGDSAQE LLSRAAIARK DATFLPGRLQ IYQDGRDLAH QRQITLIRDL RKAAQNGELS
LHYQPKLDIR QGYVRQAEAL LRWAHPQFGS VSPAEFIVLA ERTGSIYLLT NWVIEEAMRQ
LAVWRQRGLV LQVSVNISAD DLLGDDLVGY VVKLLKQYAV PAEQLLFEIT ESAVMSEPEK
ALIVLHRLRD CGISLSIDDF GTGYSSLAHL KRLPVQELKI DQSFVRNLDE TSEDAVIVRS
TIEMSHNLGL KVVAEGVEYQ HSLDLLRRWH CDTAQGYLIS RPLTASAFEA WIATYQASPG
LMVN
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