| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3934 |
|---|
| Symbol | |
|---|
| ID | 3369469 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4679341 |
|---|
| End bp | 4680090 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637654291 |
|---|
| Product | Short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_237002 |
|---|
| Protein GI | 66047161 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00121596 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCAAC TCAAACAAAA GCGCGCAGTG ATCACCGGAG CCGGCAGTGG CATCGGCGCA
GCCATCGCCC GCGCCTATGC GGCTGAAGGC GCGCGTCTGG TGCTGGGCGA CCGAGACGCC
GACAGCCTGG CGAAGATCGC TGCAGAGTGC CGCCAGCTTG GCGCCCAGGT TCAGGAATGC
GTGGCCGATG TCGGCAGCGT CGACGGCGCG CAAGCCAGCG TCGATGCCTG TGTCGAACAG
TTCGGAGGTA TCGACATTCT GGTCAACAAC GCGGGCATGC TGACCCAGGC ACGTTGCGTC
GACCTGACCC TCGATATGTG GAACGACATG CTGCGTATCG ACCTGACCAG CGTCTTTGTG
GCCAGCCAGC GTGCATTGCC GCACATGATT GCCCAGCGCT GGGGGCGCAT CATCAATGTC
GCCTCGCAAC TGGGTATCAA GGGCGGTGCT GAACTGACCC ATTACGCTGC CGCCAAGGCC
GGGGTGATCG GTTTCAGCAA GTCCCTGGCG CTGGAAGTCG CCAAGGACAA CGTGCTGGTC
AACGCCATTG CGCCCGGTCC TATCGAAACC CCACTGGTGG CCGGAATCAG CAGCGCCTGG
AAAACCGCCA AGGCCGCCGA GTTGCCGCTG GGCCGCTTCG GTCTGGCCGA AGAGGTCGCC
CCGGTGGCGG TGCTACTGGC CAGCGAGCCG GGTGGCAATC TGTTCGTCGG TCAGACACTG
GGCCCCAATT CCGGCGACGT CATGCCATGA
|
|---|
| Protein sequence | MQQLKQKRAV ITGAGSGIGA AIARAYAAEG ARLVLGDRDA DSLAKIAAEC RQLGAQVQEC
VADVGSVDGA QASVDACVEQ FGGIDILVNN AGMLTQARCV DLTLDMWNDM LRIDLTSVFV
ASQRALPHMI AQRWGRIINV ASQLGIKGGA ELTHYAAAKA GVIGFSKSLA LEVAKDNVLV
NAIAPGPIET PLVAGISSAW KTAKAAELPL GRFGLAEEVA PVAVLLASEP GGNLFVGQTL
GPNSGDVMP
|
|---|
| |