| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3930 |
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| Symbol | |
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| ID | 3369465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 4673672 |
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| End bp | 4676095 |
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| Gene Length | 2424 bp |
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| Protein Length | 807 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637654287 |
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| Product | quinoprotein |
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| Protein accession | YP_236998 |
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| Protein GI | 66047157 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000484282 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGCACTG ACAGTGCTTC AAATAGAAAT CGCCTGTTAC CGACCCTGCT CGGGCTGGTG
ATCCTGTTGA TGGGGCTGGC GTTGCTGGTC GGTGGTGCCC GACTGCTGCA ACTGGATGGC
TCGTTGTATT ACCTGCTGGC CGGTATCGGT TTCGCCGTGA CTGGCGTGTT GTTGATCACC
GGTCGTGCGG CTGCGCTGGG CCTTTATGCA CTGCTGCTGT TCGCGAGCAC GGTCTGGTCG
TTGTGGGAAG TCGGCCTCGA CTGGTGGCAA TTGGTGCCAC GCCTGGCGCT GTGGTTCGCC
CTGGGTATCG TGTTGCTGCT GCCATGGTTC CGCGAGCCGC TACTGCGCAA CGGTCCGGCA
CGCATGGGCA CCGGTGCACT GAGCATCGCT GTGGTGCTGG CCGGCCTGAC CGCACTGGCA
AGCCAGTTCA CTAACCCGGG TCGTATCGAA GGCCAGCTGG ACCGCGAGAC GGCTGGCACG
ACCAACACCG CCCCGGCGAT GCCTGACGGC GACTGGCAGT CCTACGGCCG CACCGCGTTC
GGTGACCGCT ACTCGCCACT GGCGCAGATC ACGCCGGAAA ACGTCAACAA GCTGGAGCCG
GCCTGGACCT ATCGCACGGG TGACATTCCG GGGCCGAATG ACCCGGGTGA AACCACTGCC
GAGAACACCC CGCTCAAGGT CAACGGCATG CTCTACGTGT GCACGCCGCA CAGTCAGGTG
ATCGCCCTTG ACCCGGATTC GGGCAAGGAA ATCTGGCGCT TCGATCCGAA GCTCAGCACT
CAGAACGCTG CCAACTTCAA GGGTTGGGCG CACATGACCT GCCGTGGCGT CACCTATCAT
GACGACGCTG CCTATGCCGC CAGTGCCCCG GCGCAAAGCC CGACGGTCCC GGCTGCTGAC
GGTACTGCCA CCGCCAGTGC TGCCTGCCCG CGCAGAATCT TCCTGCCGAC TGCCGACACC
CGTCTGATCG CGCTGAACGC CGACACCGGC AAGATGTGCG AAGACTTCGG CAACAAGGGT
TCGGTTGACC TGACCGCCAA CATGGGCACC TTCGCTCCGG GCGGCTACTA CTCCACGTCG
CCACCGGCGG TCACCAAGGA CCTGGTGATT ATCGGTGGCC ACGTCACTGA CAACGTTTCC
ATGGACGAGC CGTCCGGCGT GATCCGCGCC TATGACGTAC ACACTGGCCG TCTGGTGTGG
AACTGGGACA GCGGCAATCC GGAAGAAACT GCGCCGATTG CCGAAGGCAA GATCTACACG
CGCAACTCGC CGAACATGTG GTCCATGTTC AGCGTCGATG AAAAGCTCGG CATGATTTAC
CTGCCGATGG GTAACCAGAC GCCTGACCAG TGGGGCGGCG ACCGTACGCC AGAGTCCGAG
AAGTACAGCG CGGGCCTGGT TGCACTGGAC ATCGCAACCG GCCGCGTGCG CTGGGACTAC
CAGTTCACTC ACCACGACCT GTGGGACATG GACGTCGGTG GTCAGCCGAC CCTGCTGGAC
ATGAAAACCG CTGACGGCAT CAAACCCGCC GTACTGGCGT CGACCAAGCA GGGCAGCATC
TACGTCCTGG ACCGTAGCAC CGGCAAACCG ATCGTGCCGA TCAATGAAGT GCCGGTCCCG
CAAGGCGCTG TCGCGGGTGA TCACACCTCG CCAACCCAGC CCAAGTCCGA CCTGAACTTC
ATGCCGCCGC CGCTTAAAGA GCGCGACATG TGGGGCGTGA CACCGTTTGA CCAGATGATG
TGCCGGATCG ACTTCAAGTC GCTGCGCTAC GATGGTCCGT TCACCCCGCC TTCGCTGCAG
GGTTCGATCG TTTATCCGGG CAACTTCGGT GTGTTCGACT GGGGTGGTAT TTCCGTCGAC
CCGGTGCGTC AGATCGCCTT CGTCAATCCT AACTACATGG CTTTCCGTTC GAAGCTGGTG
CCTTCTGCCG AAGTTGAAGG CGGCCCGGGC CGCAAGAGCG AAACCGAAGG CGTACAGCCG
AACAAGGGCG CGCCTTATGG TGTGATCCTG GAAGCACTGC TGTCGCCGAT GGGCCTGCCT
TGCCAGGCAC CTGCATGGGG TTACGTGGCG GCTGTCGACC TGACCACCCA AAAAACCATC
TGGATGCACA AGAACGGCAC CGTGCGCGAC AGCTCGCCGA TCCCGCTTCC GCTGACCATG
GGCGTTCCAA GCCTGGGTGG TACGTTCACA ACCGCCAGCG GCCTGGCGTT CATGAGCGCT
ACGCTTGACC AGTACCTGCG TGCTTATGAC GTGCGTAACG GCAAGCAATT GTGGGAAGCC
CGCCTGCCAG CAGGCGCGCA AACCACCCCG ATGACCTACA CCGGTAAGGA CGGTCAGCAA
TACGTGCTGG TCGTTGCGGG CGGTCACGGC TCACTGGGCA CCAAACAGGG TGACTACGTG
ATGGCGTTCA AACTGCCTAA GTAA
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| Protein sequence | MSTDSASNRN RLLPTLLGLV ILLMGLALLV GGARLLQLDG SLYYLLAGIG FAVTGVLLIT
GRAAALGLYA LLLFASTVWS LWEVGLDWWQ LVPRLALWFA LGIVLLLPWF REPLLRNGPA
RMGTGALSIA VVLAGLTALA SQFTNPGRIE GQLDRETAGT TNTAPAMPDG DWQSYGRTAF
GDRYSPLAQI TPENVNKLEP AWTYRTGDIP GPNDPGETTA ENTPLKVNGM LYVCTPHSQV
IALDPDSGKE IWRFDPKLST QNAANFKGWA HMTCRGVTYH DDAAYAASAP AQSPTVPAAD
GTATASAACP RRIFLPTADT RLIALNADTG KMCEDFGNKG SVDLTANMGT FAPGGYYSTS
PPAVTKDLVI IGGHVTDNVS MDEPSGVIRA YDVHTGRLVW NWDSGNPEET APIAEGKIYT
RNSPNMWSMF SVDEKLGMIY LPMGNQTPDQ WGGDRTPESE KYSAGLVALD IATGRVRWDY
QFTHHDLWDM DVGGQPTLLD MKTADGIKPA VLASTKQGSI YVLDRSTGKP IVPINEVPVP
QGAVAGDHTS PTQPKSDLNF MPPPLKERDM WGVTPFDQMM CRIDFKSLRY DGPFTPPSLQ
GSIVYPGNFG VFDWGGISVD PVRQIAFVNP NYMAFRSKLV PSAEVEGGPG RKSETEGVQP
NKGAPYGVIL EALLSPMGLP CQAPAWGYVA AVDLTTQKTI WMHKNGTVRD SSPIPLPLTM
GVPSLGGTFT TASGLAFMSA TLDQYLRAYD VRNGKQLWEA RLPAGAQTTP MTYTGKDGQQ
YVLVVAGGHG SLGTKQGDYV MAFKLPK
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