Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_3880 |
Symbol | |
ID | 3369415 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 4620466 |
End bp | 4622958 |
Gene Length | 2493 bp |
Protein Length | 830 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637654237 |
Product | helicase, C-terminal:DEAD/DEAH box helicase, N-terminal |
Protein accession | YP_236948 |
Protein GI | 66047107 |
COG category | [R] General function prediction only |
COG ID | [COG1201] Lhr-like helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.60391 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAGAC CCACCGATTT CGCTCGACGA TGGTTTCTCG CCCGGGGCTG GAAGCCCTTT GCGTTTCAGA AAGAGGTCTG GGCAGCGGTG AAGAATGGCG AGTCCGGTTT GCTGCATGCC AGCACCGGCT CGGGCAAGAC CTACGCCGTG TGGTTCGCCG CGCTCAACCG CTTCGCCAAA GCCAATACGC TCACCGCTGA CAACAAACCC CGCAAACGCA AACCGCCTGC TGAACCGCTG AGTGTCCTGT GGATAACGCC CATGCGCGCC CTGGCCGCCG ATACCGCCCG GGCCCTTGAG GCGCCACTGG CCGAACTGGA TATCCCTTGG TCGGTCGGCT TGCGCACCGG CGATACCAGC GGCAGTGAAC GCGCCCGGCA GAGCCGGCGG CTGCCCTCGG CCTTGATCAC CACCCCTGAA AGCCTGACGC TGCTGCTGAC CCGTGCCGAC GCTCAGGTCG CCTTGTCGAC GCTGAAGATG GTGGTGGTGG ACGAATGGCA CGAGCTGATC GGCAACAAGC GTGGCGTGCA GTTGCAACTG GCCCTTGCCC GCCTGAGGCG CTGGAATCCA CAGCTGATCG TGTGGGGCAT TTCCGCGACG CTGGGTAATC AGCAACACGC GCAGCAGGTG CTGATCGGCG ACGGCGGCGT GACCGTGCAA GGCAAGATCG TCAAGGACTT GCAGGTCGAT ACGCTGTTGC CGTCTTCCAT CGAACGCTTC CCGTGGGCCG GGCACATGGG CTTGCGCATG TTGCCGCAGG TCGTCGCCGA GGTGGAAAGC AGCGCGAGCT GTCTGGTGTT CACCAACACC CGGGCGCAGT CGGAAATATG GTATCAGGCG CTACTGGAGG CCCGCCCCGA CTGGGCCGGG CTGATTGCCC TGCACCATGG ATCGCTGGCC CGAGAGGTCC GCGACTGGGT CGAACGCGCG TTGAAAGAAG GCGCACTCAA GGCCGTGGTA TGCACCTCCA GCCTGGACCT GGGCGTGGAC TTTCTGCCGG TCGAGCGCGT GTTGCAAATC GGCTCGCCCA AAGGTGTCGC GCGCCTGATG CAGCGCGCCG GTCGTTCGGG CCACGCGCCG GGTCGCCCTT CGCGCGTGAC GCTGGTGCCG ACCCACAGCC TGGAACTGGT CGAAGCCGCT GCTGCACATG ACGCCGTCGA AGCTCGGATG ATCGAGCCCC GTGAGTCACC ACACCAGCCG CTGGACGTGC TGGTCCAGCA CCTGGTCAGC ATCGCCCTGG GCGGTGGTTT TCTGCCCGAT GAACTGCTGG GCGAAGTACG CAGCGCCTGG GCTTACCACG ACCTCAGCGA CGAGCAATGG CAATGGGCGC TGGCGTTTGT CCGCAACGGC GGCCACTCAC TGACCGCCTA CCCCGATTAC CGCCGCGCCG AACCCGACGA GGACGGCGTC TGGCGGGTCC CTGATGCGCG TCTTGCCAGA CGCCACCGCA TGAGCGTGGG GACCATCGTC AGTGAGGCCA CCGTCAACCT GAAATACTGG AAAAAAGGCG GCGGTGGTGG CTCTCTGGGC AGCGTCGAGG AAGGCTTTAT CGCCAGACTC AAACCCGGTG ACGGCTTTCT GTTCGGCGGA CGCTTACTGG AATTGGTTCG AGTAGAAAAC ATGACGGCCT ACGTCAAGCG CGCGACCGGC AAGAAAGCCG CCGTGCCACG CTGGAATGGC GGTCGGATGC CGCTGTCCAG CGAACTGGCA GATGCAGTGG TGGAGAAGTT CGATGCCGCT GCGCGGGGCC AATTCAACAG CCCGGAAATG CGCGCCATCA AACCCCTGCT GGAAGTGCAG CAGCACTGGT CAGGGCTGCC GAGACGCGAC ACGTTGCTGG CCGAGACACT CAAATCCCGC GAAGGCTGGC ATCTATTCCT CTACCCGTTC GCCGGCCGTC ATGTGCACCT GGGGCTGGGC AGCCTGCTGG CCTGGCGCCT GAGCCGGCAT CGGCCGCTGA CCTTTTCCAT CGCCGTCAAC GACTACGGGC TGGAGCTGCT CAGCGCCAGC GAGATCGACT GGTCGCAGAC GTTGCAGGCC GAGCTGTTCA GCGAAACGGA TCTTTTACCC GATATCATCG CCAGCCTGAA CGCTGGCGAG CTGGCCCTGC GGCGCTTTCG GGAAATCGCG CGTATCTCCG GGTTGGTGTT TTCCGGCTAC CCTGGCGCGG CCAAGAGCAA TCGTCAGCTT CAGGCATCCA GCGGACTGTT TTTCGAGGTG TTCAAGCAAT ACGACGCTGA CAACATGCTG CTGACTCAGG CCGAACAGGA GGTCCTGCGT CAGGAACTGG ACCTGCAGCG CCTGGAGCTG ACGTTGCGCC AGATCAACAG CCGCACGCTG GACCTGCACG CTATAAAACG CGCGACCCCG CTGGCCTTTC CACTGCTGGT CGAACGCTTT CGCGAAAGCC TCAGTTCGGA GAAACTTGCC GACCGCATCG CGCGCATGGT TCGCGATCTG GAGAAAGCCG CTGGCCCGGA GCCTGAACGA TGA
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Protein sequence | MSRPTDFARR WFLARGWKPF AFQKEVWAAV KNGESGLLHA STGSGKTYAV WFAALNRFAK ANTLTADNKP RKRKPPAEPL SVLWITPMRA LAADTARALE APLAELDIPW SVGLRTGDTS GSERARQSRR LPSALITTPE SLTLLLTRAD AQVALSTLKM VVVDEWHELI GNKRGVQLQL ALARLRRWNP QLIVWGISAT LGNQQHAQQV LIGDGGVTVQ GKIVKDLQVD TLLPSSIERF PWAGHMGLRM LPQVVAEVES SASCLVFTNT RAQSEIWYQA LLEARPDWAG LIALHHGSLA REVRDWVERA LKEGALKAVV CTSSLDLGVD FLPVERVLQI GSPKGVARLM QRAGRSGHAP GRPSRVTLVP THSLELVEAA AAHDAVEARM IEPRESPHQP LDVLVQHLVS IALGGGFLPD ELLGEVRSAW AYHDLSDEQW QWALAFVRNG GHSLTAYPDY RRAEPDEDGV WRVPDARLAR RHRMSVGTIV SEATVNLKYW KKGGGGGSLG SVEEGFIARL KPGDGFLFGG RLLELVRVEN MTAYVKRATG KKAAVPRWNG GRMPLSSELA DAVVEKFDAA ARGQFNSPEM RAIKPLLEVQ QHWSGLPRRD TLLAETLKSR EGWHLFLYPF AGRHVHLGLG SLLAWRLSRH RPLTFSIAVN DYGLELLSAS EIDWSQTLQA ELFSETDLLP DIIASLNAGE LALRRFREIA RISGLVFSGY PGAAKSNRQL QASSGLFFEV FKQYDADNML LTQAEQEVLR QELDLQRLEL TLRQINSRTL DLHAIKRATP LAFPLLVERF RESLSSEKLA DRIARMVRDL EKAAGPEPER
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