| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3842 |
|---|
| Symbol | |
|---|
| ID | 3369377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 4577266 |
|---|
| End bp | 4580112 |
|---|
| Gene Length | 2847 bp |
|---|
| Protein Length | 948 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637654199 |
|---|
| Product | ATP-dependent helicase HepA |
|---|
| Protein accession | YP_236910 |
|---|
| Protein GI | 66047069 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAGC AGTATCAACC GGGGCAACGC TGGATTAGTG ACAGCGAAGC CGAGCTGGGT
TTGGGCACCG TTCTGGCACA GGACGGCCGC TTGTTGACCG TGCTCTATCC GGCCACTGGC
GAAACACGTC AGTACGCACT GCGTAACGCG CCGCTGACCC GCGTGCGCTT CTCCCCTGGC
GACGTGATCA CGCACTTCGA AAACTGGAAA ATGACCGTTC GCGAAGTCGA CGATGTCGAT
GGCCTGCTGG TCTACCACGG CCTGAACGCG CAGAACGAAC TGGTCACGCT GCCGGAAACC
CAGTTGTCGA ACTTCATCCA GTTCCGCCTG GCGACCGACC GTCTGTTCGC CGGCCAGATC
GACCAGTTGT CGTGGTTCTC GTTGCGCTAC AACACGCTCG AGCACACCAG CCGCCAATTG
CAGTCCTCGC TCTGGGGCCT GGGTGGCGTG CGCGCACAGC CTATCGCCCA CCAGTTGCAC
ATCGCTCGTG AAGTTGCAGA CCGCATCGCG CCACGCGTTC TGCTGGCCGA CGAAGTGGGC
CTGGGTAAAA CCATCGAAGC CGGCCTGGTG ATCCATCGCC AACTGCTGTC GGGCCGCGCC
AGCCGCGTGC TGATCCTGGT CCCGGAAAAC CTCCAGCACC AGTGGCTGGT GGAGATGCGT
CGTCGCTTCA ACCTGCAGGT CGCGCTGTTC GACGCCGAGC GCTTCATGGA AAGCGATGCC
GGCAACCCGT TCGAAGACAC CCAGCTCGCG CTGGTTGCCC TGGAATGGCT GGTCGAAGAC
GAAAAAGCCC AGGACGCCCT GTTTGCGGCA GGCTGGGACC TGATGGTGGT TGACGAAGCG
CACCACCTGG TCTGGCACGA AGACAAGGCC AGCCGCGAAT ATTCGCTGGT CGAACAGCTG
GCCGAAGTCA TTGCTGGCGT ACTGCTGCTG ACCGCGACGC CGGAACAACT GGGCCAGGAC
AGCCACTTTG CCCGTCTGCG CCTGCTGGAC CCGAACCGTT TCCACGACCT CAAGGCCTTC
CGTGCCGAGA GCGAGAACTA TCGCCCGGTG GCTCAGGCCG TTCAGGAACT GCTCGACAAG
GGCAAGCTGT CCGCAGCAGC ACAAGAGACC ATTCACGGCT TCCTGGGTGC CGAAGGCGAT
TCGCTGCTGG CCGCGGTGAA TACCGGCGAC GAAGAAGCCA AATCGCGTCT GATTCGTGAA
CTGCTCGACC GTCACGGCAC CGGCCGCGTG CTGTTCCGCA ACACCCGTGC CGCGGTGCAG
GGTTTCCCGG AGCGCAAGCT GCATCAATAC CCGCTGCCCT GCCCCGTCGA ATACCTCGAA
TTGCCGGTCG GCGAGCACGC CGACCTTTAC CCGGAAGTCA GCTTCCAGTC GCATTCGGAC
GTCAGTGAAG AAGAGCGCTG GTGGCGCTTC GACCCACGCG TCGACTGGCT GATCGATACC
CTGAAAATGC TCAAGCGCGT CAAGGTGCTG GTGATCTGTG CCCACGCCGA AACCGCCATG
GACCTGGAAG ACGCGCTGCG TGTGCGTTCC GGCATTCCTG CCACGGTGTT CCACGAAGGC
ATGAACATTC TCGAGCGCGA CCGTGCCGCG GCCTATTTTG CGGACGAAGA GTTCGGCGCC
CAGGTGCTGA TCTGTTCGGA AATCGGCAGC GAAGGCCGCA ACTTCCAGTT CTCCCACCAT
CTGGTCCTGT TCGATCTGCC GTCGCACCCG GACTTGCTGG AGCAGCGTAT CGGGCGTCTG
GACCGGATCG GCCAGAAGCA CACCATCGAG CTGCACGTGC CTTTCCTGGA AACCAGTCCG
CAGGCCCGCC TGTTCCAGTG GTATCACGAA GCGCTCAACG CGTTCCTCAA TACCTGCCCG
ACCGGCAACG CCCTGCAGCA TCAGTTCGGC CCGCGCCTGC TGCCGCTGCT GGAAAGCGGT
GACGACGACA AGTGGCAAAC CCTGATCAAT GAAGCCCGCA GCGAACGCGA GCGTCTGGAA
AGCGAACTGC ACACCGGTCG CGACCGCTTG CTGGAGCTCA ATTCCGGCGG CGCTGGCGAA
GGTGAAGCGC TGGTCGAAGC AATCCTCGAT CAGGACGATC AGTTCAGCCT GCCGATCTAC
ATGGAAACCC TGTTCGACGC GTTTGGCATC GACAGCGAGG ACCATTCGGA AAACGCCCTG
ATCCTCAAAC CGAGTGAAAA GATGCTCGAC GCCAGCTTCC CGCTGGGCGA CGACGAAGGC
GTGACCATTA CCTACGACCG CAATCAGGCG CTGTCCCGCG AGGACATGCA GTTCATCACC
TGGGAGCACC CGATGGTGCA AGGCGGCATG GACCTGGTGC TGTCCGGCTC GATGGGCAAC
ACCGCCGTGG CACTGATCAA GAACAAGGCG CTCAAGCCGG GCACCGTTCT GCTCGAACTG
ATCTACGTCA GCGAAGTGGT TGCGCCTCGT TCTCTGCAGC TGGGACGTTA TCTGCCGCCT
GCCGCGCTGC GCTGCCTGCT CGACCCGAAT GGCAACGATC TGGCCAGCCG TGTGTCGTTC
AACACGCTCA ATGATCAGCT CGAAAGCGTG CCCCGTGCCA GCGCCAACAA GTTCATCCAG
GCCCAACGTG ACCAACTGAC CCCGAGGATC AACGCGGGCG AAGAGAAAAT CATGCCGAAA
CACGCCGAGC GCGTCGCCGA AGCGCAGCGT CGCCTGGCAG CCGACACCGA AGAAGAACTG
GCCCGCCTGA CGGCATTGCA AGCGGTCAAC CCGACCGTGC GCGACAGTGA ACTGGTGGCT
CTGCGCACTC AACGTGAACA GGGTCTGGCC ATGCTTGAAA AAGCGGCCCT GCGTCTGGAA
GCGATCCGGG TACTGGTCGC AGGCTGA
|
|---|
| Protein sequence | MAQQYQPGQR WISDSEAELG LGTVLAQDGR LLTVLYPATG ETRQYALRNA PLTRVRFSPG
DVITHFENWK MTVREVDDVD GLLVYHGLNA QNELVTLPET QLSNFIQFRL ATDRLFAGQI
DQLSWFSLRY NTLEHTSRQL QSSLWGLGGV RAQPIAHQLH IAREVADRIA PRVLLADEVG
LGKTIEAGLV IHRQLLSGRA SRVLILVPEN LQHQWLVEMR RRFNLQVALF DAERFMESDA
GNPFEDTQLA LVALEWLVED EKAQDALFAA GWDLMVVDEA HHLVWHEDKA SREYSLVEQL
AEVIAGVLLL TATPEQLGQD SHFARLRLLD PNRFHDLKAF RAESENYRPV AQAVQELLDK
GKLSAAAQET IHGFLGAEGD SLLAAVNTGD EEAKSRLIRE LLDRHGTGRV LFRNTRAAVQ
GFPERKLHQY PLPCPVEYLE LPVGEHADLY PEVSFQSHSD VSEEERWWRF DPRVDWLIDT
LKMLKRVKVL VICAHAETAM DLEDALRVRS GIPATVFHEG MNILERDRAA AYFADEEFGA
QVLICSEIGS EGRNFQFSHH LVLFDLPSHP DLLEQRIGRL DRIGQKHTIE LHVPFLETSP
QARLFQWYHE ALNAFLNTCP TGNALQHQFG PRLLPLLESG DDDKWQTLIN EARSERERLE
SELHTGRDRL LELNSGGAGE GEALVEAILD QDDQFSLPIY METLFDAFGI DSEDHSENAL
ILKPSEKMLD ASFPLGDDEG VTITYDRNQA LSREDMQFIT WEHPMVQGGM DLVLSGSMGN
TAVALIKNKA LKPGTVLLEL IYVSEVVAPR SLQLGRYLPP AALRCLLDPN GNDLASRVSF
NTLNDQLESV PRASANKFIQ AQRDQLTPRI NAGEEKIMPK HAERVAEAQR RLAADTEEEL
ARLTALQAVN PTVRDSELVA LRTQREQGLA MLEKAALRLE AIRVLVAG
|
|---|
| |