| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3800 |
|---|
| Symbol | |
|---|
| ID | 3369335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4516878 |
|---|
| End bp | 4518140 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637654158 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_236869 |
|---|
| Protein GI | 66047028 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00131241 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCAT TTGATTCAAC TCTGAAGCAG TCCGAAATAA CTACTCATCC GCCCGCATGG
GGCGCGGTGT TTTCGATGGC GCTGTGTGTG GTGGTGCTGA TTGCGTCGGA GTTCATGCCG
GTCAGCCTGC TGACACCCAT CGCGCAGGAT CTGGGCATCA GTCAGGGGCA GGCCGGGCAG
GCGATTTCGA TCTCCGGCTT TTTTGCCGTG CTGACCAGTC TGCTGAACAC GCTGCTGACC
GGGCATCTGG ATCGCAAGCC TGTCCTGCTG GGCTTCAGCC TGTTGTTGCT GGTGTCTGGC
GTGATCGTCA CGCTGGCCTC CAACGGCTGG TTGTTCATGA CGGGCCGTGC ATTGCTCGGG
ATCGCCATTG GCGGGTTCTG GTCGATGTCG ACCGCTACCG TGATGAAGCT GGTGCCGAAG
CAATCGGTCG CCAAGGGCCT GGCATTGATC AACGGCGGCA ATGCGCTGGC GGCGACGGTC
GCCGCGCCAT TGGGCAGCTT CATGGGCCAA TACATCGGCT GGCGCGGGGC GTTTTTCCTG
GTCATCCCGC TCGCGGCGCT GGCGTTTGCC TGGCAGTGGC TGAGCCTGCC GGCCATGCGC
AGTCAGCCGA ACAACCGGGC ACGCAATCCG TTCCGCCTGC TGCGTAACCC GCAAGTGGCC
GTCGGCATGA GCGCGATCCT GTTGCTGTTC ATGGGCCAGT TCGCCGTCTT CACCTACCTG
CGCCCGTTTC TGGAAGAGAT CACCGGGGTC AGCATCAACA CGTTGTCCCT GATGCTTTTG
GCGCTGGGGG CCAGCGGGCT GGTCGGCACC TACCTGATCG GCAGGCTGCT GCACAAAGGC
CTGTATGCCT GCCTGATCGC CATTCCGCTG CTGATGGCGG TGCTGGCCGT GGCGCTCACT
GGCCTGGGTC ATTCACCTCA GTCCGTCGCC ATTGTGCTTG CCGTCTGGGG CCTGATTGCC
ACGCCTGCAC CGGTCGCCTG GGGCCTGTGG TTGAGCCGCA CGCTGCCCGA CGATGCCGAG
GCAGGCGGCG GCCTGATGGT GGCGACCATT CAATTGGCGA TCACCGCCGG GGCCGGCATC
GGCGGCGCGC TGTTCGACAG CCTCGGTTGG TGGAGCCCGT TCGCATTCGG TGGCGTGTTA
CTGGCGTGTT CGGCCGCGCT GGCCTGGACG GCACGCGACA ACGCGTTACT GCAGGAAAAA
AACACCGGTC AGGGCCGGGC AGATAAACGC GGGTCAATTT CTCAACGAGG TAACACGCCA
TGA
|
|---|
| Protein sequence | MQAFDSTLKQ SEITTHPPAW GAVFSMALCV VVLIASEFMP VSLLTPIAQD LGISQGQAGQ
AISISGFFAV LTSLLNTLLT GHLDRKPVLL GFSLLLLVSG VIVTLASNGW LFMTGRALLG
IAIGGFWSMS TATVMKLVPK QSVAKGLALI NGGNALAATV AAPLGSFMGQ YIGWRGAFFL
VIPLAALAFA WQWLSLPAMR SQPNNRARNP FRLLRNPQVA VGMSAILLLF MGQFAVFTYL
RPFLEEITGV SINTLSLMLL ALGASGLVGT YLIGRLLHKG LYACLIAIPL LMAVLAVALT
GLGHSPQSVA IVLAVWGLIA TPAPVAWGLW LSRTLPDDAE AGGGLMVATI QLAITAGAGI
GGALFDSLGW WSPFAFGGVL LACSAALAWT ARDNALLQEK NTGQGRADKR GSISQRGNTP
|
|---|
| |