| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3794 |
|---|
| Symbol | |
|---|
| ID | 3369329 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 4510450 |
|---|
| End bp | 4512822 |
|---|
| Gene Length | 2373 bp |
|---|
| Protein Length | 790 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637654152 |
|---|
| Product | surface antigen (D15):surface antigen variable number |
|---|
| Protein accession | YP_236863 |
|---|
| Protein GI | 66047022 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
|---|
| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00173749 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCTT CGCGTCTGCT TCTATCGTTC TGCCTGTTAC TCAGCGTCCC GCTGGCACAC
GCCGACACGT TTTCCATCTC GGACATCCGC GTCAACGGCC TGCAACGCGT ATCAGCCGGC
AGCGTATTCG CTGCGCTGCC GCTCAATGTC GGCGATCAGG CCGATGAGCA GCGCTTGGCC
GACGCGTCGC GCTCACTGTT CAAGACCGGT TTCTTTCAGG ACATCAACGT TGCACGCGAT
GGCAATGTGC TGGTGATCAA TGTAGTCGAA CGCCCCTCTA TCGCCAGTAT CGAGATTGTC
GGCAACAAGG TCATCAGCAC CGACGACCTG ATGAAGGGGC TCAAGCAGTC GGGGCTCAGT
GAAGGCGAGA TATTCCAGCG CGCCACGCTG GAGGGCGTGC GCAATGAACT GCAACGCCAA
TATGTCTCCC AGGGCCGCTA CAGTGCCTCG GTCGATACCC AGGCGCTGCC TGCACCACGT
AATCGCATCG CCCTGAAAAT CACCATCGAC GAAGGCACGG TGGCGTCGAT CCAGCACATC
AATGTGGTCG GCAACACAGT GTTCTCCGAT GAACAACTGG CCGACCAGTT TCAGCTCAAG
ACCAGTAACT GGCTGTCGTT TTTCAAGAAC GATGACAAGT ACGCCCGCGA AAAACTCTCC
GGCGACCTGG AGCGACTGCG CTCCTGGTAC CTGGACCGTG GCTACATCAA CATGGATATC
AATTCGACGC AGGTGTCGCT GACGCCTGAC AAGAAAGGCG TGTTCATTAC CGTCAATATC
ACCGAAGGCG ACCGCTATAC CGTGGGCAGC GTCAAGCTGG GCGGCGACCT GAAAGTGCCG
AAGGACCAGC TCGAACAACT GATTCTGGTC AAGCCGGGCC AAGTGTTTTC GCGCAAGGTC
ATGACTGACA GCAGCAACCT GATCACCCGC CGTCTGGGCA ACGATGGCTA CACATTCGCC
AACGTCAACG GCGTGCCGAA AGCCAACGAT GCCGATCACA CCGTTGATAT CAGTTTCGTG
GTCGACCCCG GCAAGCGTGC CTACGCCAAC CGCATCAACT TTCGCGGCAA CACCAAGACT
GCCGATGAGG TGCTGCGCCG TGAAATGCGC CAGATGGAAG GCGGCTGGGC CTCGACCTAC
CTGATCGACC AGTCGAAGGT GCGCCTCGAG CGTCTCGGTT TCTTCAAGGA AGTGAACGTC
GAAACGCCAG CGGTCCCCGG CACTGACGAT CAGGTGGACA TCAACTACGC CGTCGAAGAA
CAGGCCTCGG GCAACATCAC CGCCAGCGTG GGCTTTTCGC AAAGCGCCGG GCTGATACTC
GGCGGCTCCA TCTCGCAGAA CAACATCCTC GGCACCGGCA ACTTCGCCAG CCTCGGCATG
ACCCGCTCCG AGTACCAGAC CAAGTACAAC TTCGCGTTCA CCAACCCGTA CTTCACGCCT
GACGGGGTGA GCCTGGGCTA CAACGTTTTC TACAACGCGA CCGACTACAG CAAGTACTAC
GATGACGATG ACGAGGTCTC CTACTACTCG CTCAACAGCG TGGGCGCCGG GGTCAACCTC
GGCTATCCGA TCAGCGAAAC ATCGCGCCTG ACCTACGGGC TGTCGATCCA GCGTGACACC
CTCGACCCCG GCAGCTACAG CGCTGACGAG ATCTACGACT TCATCGAGCG CGAGGGTGAT
GCGTTCACCA ACCTCAAGGC CAGCGTCGGC TGGTCGGAAT CGACCCTCAA CAAGGGCGTA
CTGGCCACCC GCGGGCACTC GCAAAGCCTG ACCCTGACCA GCACCGTGCC GGGCAGTGAC
CTGCAGTTCT ACAAACTCGA CTATAACGGT CAGACCTTCC TGCCGCTCAG CGACACCACC
TCGCTGCGCC TGCATACCAA ACTGGGCTAC GGCAACGGCT ACGGCGATAC CGACGGCCTG
CCCTTCTACG AAAACTATAC GGCAGGCGGC CAGGCCACGG TGCGCGGCTT CAAGGACGGC
ACACTGGGGC CGCGCAATAC CCCGGCCACC GGCACCTACG CCAGTCAGGG GCAGATCTAC
TATTCGGACC GCGACACCGA AGCCCTGGGC GGCAACATCC TGATCACCGG CGGCATGGAA
TACCTGTTCC CGATGCCCTT CGTCAAAGAC CAGAAATCCC TGCGCACCTC GCTGTTCTGG
GACTTCGGCA CGGTTTACGC GGACAAGTGC TACCTGACCA CCACGCAGAA CTGCGGCAAC
ATCAATATCG ACCAGATGGC CAGCTCGGTC GGCGTCGGCG TGACCTGGTA CTCGCCGCTC
GGCCCCCTGA GCTTCGACCT CGCCGTGCCG ATCAAAAAGC CCGAAGACGC CGAGACCCAA
GTGTTCCAGT TCTCGCTGGG CCAGACCTTT TGA
|
|---|
| Protein sequence | MISSRLLLSF CLLLSVPLAH ADTFSISDIR VNGLQRVSAG SVFAALPLNV GDQADEQRLA
DASRSLFKTG FFQDINVARD GNVLVINVVE RPSIASIEIV GNKVISTDDL MKGLKQSGLS
EGEIFQRATL EGVRNELQRQ YVSQGRYSAS VDTQALPAPR NRIALKITID EGTVASIQHI
NVVGNTVFSD EQLADQFQLK TSNWLSFFKN DDKYAREKLS GDLERLRSWY LDRGYINMDI
NSTQVSLTPD KKGVFITVNI TEGDRYTVGS VKLGGDLKVP KDQLEQLILV KPGQVFSRKV
MTDSSNLITR RLGNDGYTFA NVNGVPKAND ADHTVDISFV VDPGKRAYAN RINFRGNTKT
ADEVLRREMR QMEGGWASTY LIDQSKVRLE RLGFFKEVNV ETPAVPGTDD QVDINYAVEE
QASGNITASV GFSQSAGLIL GGSISQNNIL GTGNFASLGM TRSEYQTKYN FAFTNPYFTP
DGVSLGYNVF YNATDYSKYY DDDDEVSYYS LNSVGAGVNL GYPISETSRL TYGLSIQRDT
LDPGSYSADE IYDFIEREGD AFTNLKASVG WSESTLNKGV LATRGHSQSL TLTSTVPGSD
LQFYKLDYNG QTFLPLSDTT SLRLHTKLGY GNGYGDTDGL PFYENYTAGG QATVRGFKDG
TLGPRNTPAT GTYASQGQIY YSDRDTEALG GNILITGGME YLFPMPFVKD QKSLRTSLFW
DFGTVYADKC YLTTTQNCGN INIDQMASSV GVGVTWYSPL GPLSFDLAVP IKKPEDAETQ
VFQFSLGQTF
|
|---|
| |