| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3791 |
|---|
| Symbol | |
|---|
| ID | 3369326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4506809 |
|---|
| End bp | 4508146 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637654149 |
|---|
| Product | helicase, C-terminal:DEAD/DEAH box helicase, N-terminal |
|---|
| Protein accession | YP_236860 |
|---|
| Protein GI | 66047019 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.138512 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00122531 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGTTTTCCG AATTCGCCCT GCACGAACGC CTGCTCAAAG CTGTGGCCGA GCTTAAATTT
GTCGAGCCTA CGCCCGTGCA GGCGGCCGCC ATTCCGCTCG CACTGCAAGG GCGCGACCTG
CGGGTGACTG CGCAAACCGG TAGCGGCAAG ACCGCCGCAT TTGTGCTGCC GATCCTCAAT
CGTCTGATCG GCCCGGCCAA GGTCCGTGTC GATATTCGCG CGGTGATCCT GCTGCCGACC
CGTGAGCTGG CTCAGCAGAC GCTCAAGGAA GTCGAGCGCT TCTCGCAGTT CACCTTCGTC
AAGGCCGGTT TGATCACCGG TGGCGAGGAC TTCAAGGTTC AGGCTGCCAT GCTGCGCAAG
GTGCCGGACA TTCTGATCGG CACGCCGGGT CGCCTGCTGG AGCAGTTGAA CGCAGGCAAC
CTGGACCTCA AGCACGTTGA AGTGCTGGTA CTGGACGAAG CCGACCGCAT GCTGGACATG
GGCTTCTCCG AAGACGTCGA GCGTCTGGCC GGCGAATGTG CCGGTCGCGA GCAGACCATG
CTGTTCTCGG CGACCACCGG CGGCGCTGGC CTGCGGGAAA TGATCGGCAA GGTGCTCAAG
GATCCGCAGC ACCTGCAAGT GAACAGCGTC AGCGAGCTGG CTTCCGGCAC ACGCCACCAG
ATCATCACCG CCGACCACAA CGTGCACAAA GAGCAGGTTC TCAACTGGCT GCTGGCCAAC
GAGACTTACC AGAAAGCCAT TATCTTCACC AATACCAAGG CCATGGCCGA CCGTCTGTAT
GGCCGCCTGG TAGCGCTGGA ATACAAGGCG TTCGTGCTGC ACGGCGACAA GGACCAGAAG
GACCGCAAGG CGGCCATCGA CCGTCTCAAG CAGGGCGGCG CGAAAATCAT GGTTGCCACC
GATGTGGCGG CTCGTGGCCT TGATGTCGAA GGTCTGGACA TGGTGATCAA CTTCGACATG
CCACGCAGCG GCGACGACTA CGTCCACCGC GTCGGGCGTA CCGGCCGCGC GGGCAGCGAC
GGTCTGGCGA TCTCGCTGAT CTGTCATGGC GACTGGAACC TGATGTCGAG CGTGGAGCGC
TATCTCAAGC AGAGCTTCGA GCGTCGCGTC ATCAAGGAAG TCAAAGGCAC CTACGGCGGG
CCGAAGAAGG TCAAGGCCTC CGGCAAGGCA GTCGGCGTCA AGAAGAAAAA GACCGACGCC
AAGGGCGACA AGAAGAAGGT CGCGGCCAAA GGGCCGACCA AACGCAAGAC GGTCAACCGT
CCCAAGTCTG ACCTGGTCAG CCAGGACGGC ATGGCCCCGC TGAAAAAACG CAGCACCCCG
GCCCCGGCTG CCGAGTGA
|
|---|
| Protein sequence | MFSEFALHER LLKAVAELKF VEPTPVQAAA IPLALQGRDL RVTAQTGSGK TAAFVLPILN
RLIGPAKVRV DIRAVILLPT RELAQQTLKE VERFSQFTFV KAGLITGGED FKVQAAMLRK
VPDILIGTPG RLLEQLNAGN LDLKHVEVLV LDEADRMLDM GFSEDVERLA GECAGREQTM
LFSATTGGAG LREMIGKVLK DPQHLQVNSV SELASGTRHQ IITADHNVHK EQVLNWLLAN
ETYQKAIIFT NTKAMADRLY GRLVALEYKA FVLHGDKDQK DRKAAIDRLK QGGAKIMVAT
DVAARGLDVE GLDMVINFDM PRSGDDYVHR VGRTGRAGSD GLAISLICHG DWNLMSSVER
YLKQSFERRV IKEVKGTYGG PKKVKASGKA VGVKKKKTDA KGDKKKVAAK GPTKRKTVNR
PKSDLVSQDG MAPLKKRSTP APAAE
|
|---|
| |