| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3707 |
|---|
| Symbol | |
|---|
| ID | 3369242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4393305 |
|---|
| End bp | 4394657 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637654066 |
|---|
| Product | C4-dicarboxylate transporter DctA |
|---|
| Protein accession | YP_236777 |
|---|
| Protein GI | 66046936 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1301] Na+/H+-dicarboxylate symporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00151684 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGACTC GTCAGCCCAT CTACAAATCC CTCTATTTTC AGGTAATCGT TGCGATTGTC
ATCGGTATCC TGATCGGTCA TTTCTACCCG GACACCGGCA AGGCGTTAAA ACCGCTGGGT
GACGGGTTCA TCAAACTGAT CAAGATGGTT ATTGCCCCGA TCATCTTCTG TACCGTCGTC
AGTGGTATCG CTGGCATGCA GAGCATGAAG TCGGTCGGCA AGACCGGCGG TTATGCGCTG
CTGTATTTCG AGATCGTTTC GACCATCGCC CTGCTGATCG GTCTGATCGT GGTCAACGTG
GTTCAGCCGG GTGCCGGCAT GAATATCGAC GTCAGCACGC TCGACGCTTC GAAGATCGCT
GCCTACGTCA CTGCCGGTCA GGACCAGAGT ATCGTCGGCT TCATCCTTAA CGTGATTCCG
AACACCATCG TCGGCGCGTT TGCCAACGGC GATATCCTGC AAGTCCTGAT GTTCTCGGTG
ATCTTCGGCT TCGCGCTGCA TCGCCTGGGT GCCTACGGCA AGCCGGTTCT GGACTTCATC
GATCGCTTCG CCCACGTGAT GTTCAACATC ATCAACATGA TCATGAAACT GGCCCCGCTG
GGTGCGTTCG GTGCCATGGC CTTCACCATC GGTGCCTACG GCGTGAGCTC GCTGGTGCAA
CTGGGTCAGT TGATGATCTG CTTCTACATC ACCTGCGCAC TGTTCGTCGT GTTTGTACTG
GGCGCGATCG CCCGCGCTCA CGGCTTCAGC ATCTTCAAGC TGATTCGCTA CATCCGTGAA
GAGCTGCTGA TCGTACTGGG TACGTCTTCT TCGGAATCGG CCCTGCCGCG CATGCTGATC
AAGATGGAGC GCCTGGGTGC CAAGAAGTCT GTGGTCGGTC TGGTTATCCC GACGGGCTAC
TCGTTCAACC TGGACGGTAC GTCGATCTAC CTGACCATGG CCGCCGTGTT CATCGCTCAG
GCGACCAACA CGCACATGGA TATCACGCAT CAGATCACCC TGCTGCTGGT ACTGCTGCTG
TCGTCCAAAG GTGCTGCCGG CGTAACCGGT AGCGGCTTTA TCGTACTGGC TGCGACCCTG
TCGGCTGTAG GCCACCTGCC GGTGGCTGGT CTGGCGCTGA TTCTGGGTAT CGACCGCTTC
ATGTCCGAAG CCCGCGCCCT GACCAACCTG GTCGGTAACG CTGTTGCCAC CGTTGTGGTT
GCCAAGTGGG TCGGCGAGCT GGACACCGAC AAGCTGCAGT CCGAGCTGGC TTCCGGTGGC
TCTGCCATTC TGGAAACCCG CCCTGAAGAC GACCTCGGCG TTGCCGAAGG CCCGACTCCA
GGCGCTGCAG TTAACACTAC CAAGACCGTC TGA
|
|---|
| Protein sequence | MTTRQPIYKS LYFQVIVAIV IGILIGHFYP DTGKALKPLG DGFIKLIKMV IAPIIFCTVV
SGIAGMQSMK SVGKTGGYAL LYFEIVSTIA LLIGLIVVNV VQPGAGMNID VSTLDASKIA
AYVTAGQDQS IVGFILNVIP NTIVGAFANG DILQVLMFSV IFGFALHRLG AYGKPVLDFI
DRFAHVMFNI INMIMKLAPL GAFGAMAFTI GAYGVSSLVQ LGQLMICFYI TCALFVVFVL
GAIARAHGFS IFKLIRYIRE ELLIVLGTSS SESALPRMLI KMERLGAKKS VVGLVIPTGY
SFNLDGTSIY LTMAAVFIAQ ATNTHMDITH QITLLLVLLL SSKGAAGVTG SGFIVLAATL
SAVGHLPVAG LALILGIDRF MSEARALTNL VGNAVATVVV AKWVGELDTD KLQSELASGG
SAILETRPED DLGVAEGPTP GAAVNTTKTV
|
|---|
| |