| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3698 |
|---|
| Symbol | |
|---|
| ID | 3369233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 4385550 |
|---|
| End bp | 4388303 |
|---|
| Gene Length | 2754 bp |
|---|
| Protein Length | 917 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637654057 |
|---|
| Product | response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt |
|---|
| Protein accession | YP_236768 |
|---|
| Protein GI | 66046927 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.34744 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00600076 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCTGACCA AGCTGGGTAT AAAAGGCCGT GTGCTGCTAC TGACTATTTT GCCTGCCAGC
CTGATGGCGG CGATGCTCGG TGGCTATTTC ACCTGGATGC AGTTGAGCGA ACTGCAAAGC
CAGCTGCTGC AACGCGGCGA AATGATCGCC CAGGATCTGG CGCCCCTTGC CGCCAATGCA
CTGGGGCGCA AGGACAAAGT ACTGCTCAGT CGCATCGCCA CCCAGACGCT GGAACAGACC
GACGTGCGCG CCGTGTCGTT TCTCGACACC GATCGCACGG TACTGGCCCA CGCCGGGCCG
ACCATGATCA GCCCGTCGCC GATTGGCAGC GGGTCGCAGT TGCTCAGCTC GACCGGCACC
GACGCCACGC GCTACCTGCT GCCGGTATTC GGCAGTCAAC GCCACCTGAC CAGCCCGATC
ATTCCTGCCG AAGCCGACAC CCTGCTGGGC TGGGTCGAGC TTGAAATATC CCATAACGGT
ACGCTGCTGC GCGGCTACCG AAGCCTGTTT GCCAGCCTGC TGCTGATCCT CACCGGGCTG
GCGTTCACCG CAACCCTCGC GGTACGCATG AGCCGCACCA TCAACGGGCC GATGAGCCAG
ATCAAGCAGG CCGTGTCGCA ACTCAAGGAC GGCAATCTGG AAACCCGTCT GCCACCGCTG
GGCAGCCGCG AGCTGGACGA ACTGGCGTCG GGCATCAACC GCATGGCGGC GACGCTGCAG
AACGCGCAGG AAGAACTGCA ACTGAGCATC GATCAGGCGA CCGAGGATGT CCGGCAGAAT
CTGGAGACCA TCGAAATCCA GAACATCGAA CTGGACCTGG CCCGTAAGGA AGCGCTTGAA
GCAAGCCGGA TCAAGTCCGA ATTCCTGGCC AACATGAGCC ATGAAATCCG CACGCCGCTC
AATGGCATTC TGGGCTTCAC CCATTTGCTG CAGAAAAGCG AACTGACGCC GCGCCAGTTC
GACTACCTGG GCACCATCGA GAAGTCCGCC GACAACCTGT TGAGCATCAT CAACGAGATT
CTCGACTTCT CGAAGATCGA GGCCGGCAAG CTGGTGCTCG ACAATATCCC GTTCAACCTG
CGCGACCTGT TGCAGGACAC CCTGACCATC CTCGCCCCGG CGGCGCACGC CAAACAGCTG
GAACTGGTCA GTCTGGTGTA CCGCGATACG CCACTGGCGC TGTCCGGCGA CCCGCTGCGT
CTGCGGCAGA TCCTGACCAA TCTGGTCAGC AACGCGATCA AGTTCACCCG CGAAGGCACG
ATCGTCGCGC GCGCCATGCT CGAAGATGAA ACCGAAGAGC ACGCGCAACT GCGCATCAGC
GTGCAGGACA CCGGGATCGG CCTGTCCAGT CAGGATGTGC GAGCGCTGTT CCAGGCCTTC
AGCCAGGCCG ACAACTCGCT CTCGCGCCAA CCGGGCGGTA CCGGACTGGG TCTGGTGATC
TCCAAGCGCC TGATCGAACA GATGGGCGGT GAAATCGGTG TCGACAGCAC ACCGGGCGAA
GGTTCGGAAT TCTGGATCAG CCTGAAACTG CCCAAGGCCC GCGAAGACAA GGAAGAATCA
CTCAATATTC CGCTCGGCGG CCTGCGCGCC GCAGTGCTTG AACATCATGA CCTGGCGCGT
CAGGCGCTGG AGCATCAACT GGAAGACTGC GGCCTGCAGA CCATCGTGTT CAATAACCTG
GAGAACCTGC TCAACGGCGT GACCGCAGCG CACGAGACGC CAGCGGCCAT CGATCTGGCG
GTACTTGGCG TGACGGCGCT GGAAATCTCT CCGGAACGGT TGCGCCAGCA CATCTGGGAC
CTGGAAAACC TCAATTGCAA GGTCATGGTG CTGTGCCCGA CCACCGAGCA CGCGCTGTTC
CAGTTGGCGG TCCACGATGT CTACACGCAA CTGCAGGCCA AGCCCGCCTG CACGCGCAAA
CTGCAAAAAG CCCTGTCCGA GCTGATCGCG CCGCGAGCGG TGCGTGCCGA CATCGGCCCG
CCATTGTCGA GCCGTGCACC GCGAGTGCTG TGTGTGGACG ACAACCCGGC CAACCTGCTG
CTGGTGCAGA CCCTGCTCGA AGACATGGGC GCTGAAGTGG TCGCTGTCGA GGGCGGCTAC
GCAGCGGTCA ATGCCGTGCA ACAGGAAGCG TTCGACCTGG TGTTGATGGA CGTGCAGATG
CCCGGCATGG ACGGTCGGCA GGCTACCGAG GCGATCCGCG CCTGGGAGGC CGAACGCAAC
CAGAGCTCGC TGCCGATCGT GGCCCTCACC GCGCATGCGA TGGCCAATGA AAAACGCTCA
CTGCTGCAAA GCGGTATGGA CGACTACCTG ACCAAGCCGA TCAGCGAACG GCAGCTGGCG
CAGGTGGTGC TCAAGTGGAC CGGGCTGGCG CTGCGCAACC CTGCGCCGGA ACGCCAGAAT
GAAGCGCTCG AGGTGCACGT CGGGCCGCTG GTGCTGGATC ATGAAGAAGG GTTGCGCCTG
GCTGCGGGCA AGGCGGATCT CGCCGCCGAC ATGCTGGCCA TGCTGCTGGC CTCCCTGGAC
GCTGACCGCG AAGCCATTCG TGTGGCGCGT GCCAACCAGG ATGTACACGC CTTGATCGAA
CGCATCCACC GTCTGCACGG CGCAACGCGT TATTGCGGCG TTCCCCAGCT GCGCAGTGCC
TGCCAACGCG CCGAAACCCT GCTCAAGCAG AACGCCCCGC ACACCGAAGA GGCCCTTAAC
GATCTGGACA AGGCCATCAT TCGCCTGGAA GCCGAGGCGC GGGTCATGGC TTGA
|
|---|
| Protein sequence | MLTKLGIKGR VLLLTILPAS LMAAMLGGYF TWMQLSELQS QLLQRGEMIA QDLAPLAANA
LGRKDKVLLS RIATQTLEQT DVRAVSFLDT DRTVLAHAGP TMISPSPIGS GSQLLSSTGT
DATRYLLPVF GSQRHLTSPI IPAEADTLLG WVELEISHNG TLLRGYRSLF ASLLLILTGL
AFTATLAVRM SRTINGPMSQ IKQAVSQLKD GNLETRLPPL GSRELDELAS GINRMAATLQ
NAQEELQLSI DQATEDVRQN LETIEIQNIE LDLARKEALE ASRIKSEFLA NMSHEIRTPL
NGILGFTHLL QKSELTPRQF DYLGTIEKSA DNLLSIINEI LDFSKIEAGK LVLDNIPFNL
RDLLQDTLTI LAPAAHAKQL ELVSLVYRDT PLALSGDPLR LRQILTNLVS NAIKFTREGT
IVARAMLEDE TEEHAQLRIS VQDTGIGLSS QDVRALFQAF SQADNSLSRQ PGGTGLGLVI
SKRLIEQMGG EIGVDSTPGE GSEFWISLKL PKAREDKEES LNIPLGGLRA AVLEHHDLAR
QALEHQLEDC GLQTIVFNNL ENLLNGVTAA HETPAAIDLA VLGVTALEIS PERLRQHIWD
LENLNCKVMV LCPTTEHALF QLAVHDVYTQ LQAKPACTRK LQKALSELIA PRAVRADIGP
PLSSRAPRVL CVDDNPANLL LVQTLLEDMG AEVVAVEGGY AAVNAVQQEA FDLVLMDVQM
PGMDGRQATE AIRAWEAERN QSSLPIVALT AHAMANEKRS LLQSGMDDYL TKPISERQLA
QVVLKWTGLA LRNPAPERQN EALEVHVGPL VLDHEEGLRL AAGKADLAAD MLAMLLASLD
ADREAIRVAR ANQDVHALIE RIHRLHGATR YCGVPQLRSA CQRAETLLKQ NAPHTEEALN
DLDKAIIRLE AEARVMA
|
|---|
| |