| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3695 |
|---|
| Symbol | |
|---|
| ID | 3369230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4380642 |
|---|
| End bp | 4382885 |
|---|
| Gene Length | 2244 bp |
|---|
| Protein Length | 747 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637654054 |
|---|
| Product | RelA/SpoT protein |
|---|
| Protein accession | YP_236765 |
|---|
| Protein GI | 66046924 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.120676 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00160014 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGTACAGG TGAGAGCGAA CCAGCCGATA AACACAGACG GCAGTATCAA TCTCGACGCG
TGGCTCGATC ATATTGTCAG CGTCGACCTG GTCCTGGACC GGGAAGTCAT GAAAAAGGCC
TGTGAATTTG CCCGGGAAGC CGAGCAGACC GACAAGGCTC ACAAGAATCA TTGGGCAGAG
GGCACCTCCA GTTTCCAGAC CGGTCTGGAA ATCGCGGAGA TCCTGGCTGA CCTCAAGCTG
GATCAGGACT CGCTGGTCGC TGCGGTCATT TACCGTGGCG TGCGTGAAGG TCTCATTGCG
CTGCCGGACG TCGAGCAGCG CTTTGGCGCA ACGGTCGCCA AACTCATCGA CGGCGTGCTG
CGCATGGCCG CGATCAGCGC CAGCCTCAGC CCTCGTCAGT CATTGGTGCT CGGCAGTCAG
GCGCAGGTGG AAAACCTGCG CAAGATGCTG GTGGCGATGG TCGACGACGT TCGCGTTGCG
CTGATCAAGC TGGCCGAACG TACCTGCGCG ATTCGTGCGG TGAAGAATGC CGACGACGAA
AAACGCAACC GTGTGGCTCG CGAAGTCTTC GACATCTATG CGCCACTGGC CCACCGCCTG
GGTATCGGGC ATATCAAGTG GGAGCTGGAG GACCTGTCCT TCCGCTACCT GGAGCCCGAT
CAATACAAGC AGATCGCCAA GCTGCTGCAT GAACGCAGGC TGGACCGCGA GCGCTTCATC
AGCGACGTCA TGTCTCAACT CGATAACGAG CTGCAGGCCA CCGGCGTGAC CGCTGACATC
AGCGGTCGTG CCAAGCATAT CTACTCCATC TGGCGCAAAA TGCAGCGCAA GGGCCTGGCG
TTCAGCCAGA TCTATGACGT GCGTGCGTTG CGTGTGCTGG TCCCGGAAAT GCGCGACTGC
TACACCGCGC TGGGTATCGT GCACACCTTG TGGCGGCATA TTCCCAAAGA GTTCGACGAT
TACATCGCCA ACCCCAAGGA AAACGGCTAT CGCTCGCTGC ACACCGCCGT GATCGGGCCG
GAAGGCAAGG TGCTGGAAGT GCAGATCCGC ACCCACGCCA TGCATGAAGA GGCCGAGCTG
GGCGTTTGTG CGCACTGGCG CTATAAAGGC ACCGACGTCA AATCCGGCTC CAATCATTAC
GAAGAGAAGA TTTCCTGGCT GCGTCAGGTG CTCGAATGGC ATGAGGAGCT GGGCGACATC
GGCGGTCTGG CCGATCAGTT GCGGGTTGAT ATCGAGCCCG ACCGCGTCTA CGTCTTCACC
CCGGACGGCC ACGCCATCGA CCTGCCCAAG GGCGCGACAC CGCTGGACTT CGCCTATCGG
GTGCACACCG AAATCGGCCA TAACTGCCGG GGTGCGAAGA TCAATGGCCG CATCGTACCG
CTCAACTACA GCCTGCAGAC CGGCGAGCAG GTCGAGATCA TCACCAGCAA GCACGGTACG
CCGAGCCGCG ACTGGCTGAA CTCGAACCTG GGCTACATCA CCACCTCGCG CGCGCGGGCC
AAGATCGTTC ACTGGTTCAA GTTGCAGGCT CGCGACCAGA ACGTCGCCGC CGGCAGAACC
CTGATCGAAC GCGAACTGGC GCGCCTGGCG TTACCGCAGG TCGATTTCGA CAAGCTGGCG
GACAAGGCCA ATCACAAGAC CGCCGACGAC ATGTTTGCGG CATTGGGCGC GGGCGATCTG
CGTCTGGCGC AACTGGTCAA TCTGGCTCAG CAGCAGGTTG AGCCTGATCG CGTCAATGAA
CAGCTGGAGC TGATCCCGCG CAAGGCCACC GGCTACAAGC CCGGCAAGCG TGGCGATATT
CAGATTCAGG GCGTCGGCAA CCTGATGACG CAGATGGCCG GCTGCTGCCA GCCGCTGCCG
GGCGATGCGA TCGTCGGTTA TATCACTCAG GGGCGTGGCG TCAGCATTCA CCGTCAGGAT
TGCGCTTCGG TGCTGCAATT GGGCGGTCGC GAGCCCGAGC GGATCATTCA GGTCAGTTGG
GGGCCGGTGC CGGTACTCAC CTATCCGGTG GACATCATCA TCCGTGCCTA CGACCGTTCC
GGCTTGCTCC GGGACGTCAC CCAGGTGCTG CTCAACGAGC GGATCAACGT GCTGGCGGTC
AATACCCGTT CGAACAAGGA AGACAACACA GCGCTCATGT CTCTGACCAT CGAGATTCCG
GGTCTGGACG CGCTGGGGCG GTTGCTGGGG CGCATTTCCC AGCTGCCGAA CATCATTGAA
ACGCGCAGGA ACAGGACGCC CTAG
|
|---|
| Protein sequence | MVQVRANQPI NTDGSINLDA WLDHIVSVDL VLDREVMKKA CEFAREAEQT DKAHKNHWAE
GTSSFQTGLE IAEILADLKL DQDSLVAAVI YRGVREGLIA LPDVEQRFGA TVAKLIDGVL
RMAAISASLS PRQSLVLGSQ AQVENLRKML VAMVDDVRVA LIKLAERTCA IRAVKNADDE
KRNRVAREVF DIYAPLAHRL GIGHIKWELE DLSFRYLEPD QYKQIAKLLH ERRLDRERFI
SDVMSQLDNE LQATGVTADI SGRAKHIYSI WRKMQRKGLA FSQIYDVRAL RVLVPEMRDC
YTALGIVHTL WRHIPKEFDD YIANPKENGY RSLHTAVIGP EGKVLEVQIR THAMHEEAEL
GVCAHWRYKG TDVKSGSNHY EEKISWLRQV LEWHEELGDI GGLADQLRVD IEPDRVYVFT
PDGHAIDLPK GATPLDFAYR VHTEIGHNCR GAKINGRIVP LNYSLQTGEQ VEIITSKHGT
PSRDWLNSNL GYITTSRARA KIVHWFKLQA RDQNVAAGRT LIERELARLA LPQVDFDKLA
DKANHKTADD MFAALGAGDL RLAQLVNLAQ QQVEPDRVNE QLELIPRKAT GYKPGKRGDI
QIQGVGNLMT QMAGCCQPLP GDAIVGYITQ GRGVSIHRQD CASVLQLGGR EPERIIQVSW
GPVPVLTYPV DIIIRAYDRS GLLRDVTQVL LNERINVLAV NTRSNKEDNT ALMSLTIEIP
GLDALGRLLG RISQLPNIIE TRRNRTP
|
|---|
| |