Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_3653 |
Symbol | |
ID | 3369188 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 4338567 |
End bp | 4339493 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637654012 |
Product | GGDEF |
Protein accession | YP_236723 |
Protein GI | 66046882 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.203802 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTTTC CTACCCAGAC CCATGCAATC GACTTCGATA CGGCTGAACT GCAACGCCTC GGGTTTAGAA ATCGACCTGA CGCCGTGCTT CCACCCCCGT CACTGCCCGA GCTGATCTAC CAGCTTGGGC GACAATTGCA GACCAGTCTG GAAGCCGAGC GGATACTGAC CCTGTTTTTT CAGGGTGTAC AACGCTTCCT GCCATTGAGC GGTCTGATGT ATCGACATAT CGAAAGCGAC TTGCAGCTGC GTCTGGGCGA GATGTCATCC GACAGCGCCA TTTTTCACCT GCGTCATGAA GGCAAATGCA TCGGCGAACT GGAGTTTCAA GGCGCCAGGC CATTCGACAC GCGGCAATTG AGCGACCTTG AATCGCTGCT GGTCTGCCTG GTGTACCCGC TGCTGAATGC GCTGCTGTAC CGCATTGCCA CGCAAACTGC CCTGCGTGAT CCGCTGACCA GCACCGGCAA CCGCATCGCC ATGGATCAGG GCCTGGCCCG AGAAATCGAA ATTTCACGGC GCCACAAGCA ACCGCTGTCA CTGCTGATGC TGGATATCGA CCACTTCAAG AAAGTGAATG ATGAATACGG TCATCATACC GGCGACGATG TGCTGAAAAC CGTTGCGCAG AGCCTGAAGG CGCAACTGCG CAATATTGAT CGGGTGTTCC GCTACGGCGG TGAAGAGTTC GTGGTGATTC TGTCCAACAC CGGCGCCGAC TCTGCCGAAC TGATTGGTCA GCGTCTGTGC CAGGCGGTGC GCAATCTCGA GTTTCGCGAA CTCAGCCCGG CGTTGACCAT GACCGTGAGC CTGGGTTGCT CGACACTGCT GCCGACGGAA ACAGCCGACA GCCTGCTGCG CCGTGCCGAT AATGCGCTGT ACGTCGCCAA ACGCGAAGGC CGTAACCGTA TCGCCATGGC CAGCTAG
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Protein sequence | MNFPTQTHAI DFDTAELQRL GFRNRPDAVL PPPSLPELIY QLGRQLQTSL EAERILTLFF QGVQRFLPLS GLMYRHIESD LQLRLGEMSS DSAIFHLRHE GKCIGELEFQ GARPFDTRQL SDLESLLVCL VYPLLNALLY RIATQTALRD PLTSTGNRIA MDQGLAREIE ISRRHKQPLS LLMLDIDHFK KVNDEYGHHT GDDVLKTVAQ SLKAQLRNID RVFRYGGEEF VVILSNTGAD SAELIGQRLC QAVRNLEFRE LSPALTMTVS LGCSTLLPTE TADSLLRRAD NALYVAKREG RNRIAMAS
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