Gene Psyr_3642 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_3642 
SymbolrpsA 
ID3369177 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp4323992 
End bp4325683 
Gene Length1692 bp 
Protein Length563 aa 
Translation table11 
GC content55% 
IMG OID637654001 
Product30S ribosomal protein S1 
Protein accessionYP_236712 
Protein GI66046871 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0539] Ribosomal protein S1 
TIGRFAM ID[TIGR00717] ribosomal protein S1 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0546866 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.793215 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAAA GCTTTGCAGA ACTTTTTGAA GAAAGCCTAA AGACCCTCAA CCTTCAGGCC 
GGTTCGATCA TCACCGCGAT CATCGTTGAT ATCGACTACC AGGCAGGTTG GGTTACGGTT
CACGCCGGTC TGAAATCTGA AGGCCTCATC CCGCTGGAAC AGTTCCACAA CGACGCTGGC
GAGCTGACCA TCAAGATCGG TGATGAAGTT CACGTTGCGC TGGACGCGGT CGAAGATGGC
TTTGGCGAAA CCAAGCTGTC CCGCGAAAAA GCCAAGCGTG CCGAGTGCTG GATCGTTCTG
GAAGCGGCTT TCGCAGCTGA AGAAGTGGTC AAGGGCGTTA TCAACGGTAA GGTTAAAGGC
GGCTTCACTG TCGACGTTAA CGGCATCCGT GCGTTCCTGC CTGGTTCTCT GGTTGACGTC
CGCCCTGTGC GTGACACGAC TCACCTGGAA GGCAAAGAGC TCGAGTTCAA GGTCATCAAG
CTGGACCAGA AGCGCAACAA CGTTGTCGTT TCCCGTCGCA GTGTCCTGGA AGCCGAGAAC
AGTGCCGAGC GCGAAGCTCT GCTCGAGTCC CTGCAGGAAG GTCAGCAAGT CAAGGGTATC
GTCAAGAACC TCACCGATTA CGGCGCATTC GTCGATCTGG GTGGCGTCGA TGGCCTGCTG
CACATCACCG ACATGGCCTG GAAGCGTATC AAGCATCCAT CGGAAATCGT CAACGTTGGC
GACGAGATCG ATGTCAAGGT CCTGAAGTAC GATCGCGAGC GCAATCGTGT TTCCCTGGGT
CTGAAGCAAC TGGGTGAAGA TCCATGGGTT GCTATCAAGG CTCGCTACCC GGAAAGCACC
CGCGTTACCG CGCGTGTGAC CAACCTGACC GACTACGGCT GCTTCGCAGA GCTGGAAGAA
GGCGTGGAAG GCCTGGTACA CGTTTCCGAA ATGGACTGGA CCAACAAGAA CATCCACCCT
TCGAAAGTCG TTCAGGTTGG CGACGAAGTG GAAGTCATGG TTCTGGACAT CGACGAAGAG
CGTCGTCGTA TTTCCCTCGG CATCAAACAG TGCAAATCCA ACCCATGGGA AGATTTCTCT
GGCCAGTTCA ACAAGGGCGA TAAAATCTCC GGCACCATCA AGTCGATCAC CGATTTCGGT
ATCTTCATTG GTCTGGACGG CGGCATCGAC GGTCTGGTTC ACCTGTCCGA CATCTCCTGG
AACGAAGTGG GCGAAGAAGC CGTACGTCGC TTCAAGAAGG GCGACGAGCT CGACACTGTG
ATCCTGTCGG TTGATCCTGA GCGTGAGCGT ATCTCGCTGG GTATCAAGCA GCTGGAAAGC
GATCCGTTCT CCGAGTACGT CACTGTCAAT GACAAGGGCG CCATCGTTCG CGGTATCGTT
AAAGAAGTTG ACGCCAAAGG CGCCATCATC ACTCTGGCCG ACGACATCGA AGCGACCCTC
AAGGCTTCCG AAATCAGCCG TGACCGCGTT GAAGACGCGC GTAACGTTCT GAAGGAAGGC
GAAGAGATCG AAGCCAAGAT CATCAGCGTT GACCGCAAGA GCCGCGTAAT CAGCTTGTCC
ATCAAGTCGA AAGACGTTGA AGACGAGAAA GAAGCGATCC AGAGCCTGCG TAGCAAGCCT
GAAGTCGCTG AAAGCACTGG TCCTACCACT ATTGGTGACC TGTTGCGCGC GCAAATGGAA
AAACAGAACT AA
 
Protein sequence
MSESFAELFE ESLKTLNLQA GSIITAIIVD IDYQAGWVTV HAGLKSEGLI PLEQFHNDAG 
ELTIKIGDEV HVALDAVEDG FGETKLSREK AKRAECWIVL EAAFAAEEVV KGVINGKVKG
GFTVDVNGIR AFLPGSLVDV RPVRDTTHLE GKELEFKVIK LDQKRNNVVV SRRSVLEAEN
SAEREALLES LQEGQQVKGI VKNLTDYGAF VDLGGVDGLL HITDMAWKRI KHPSEIVNVG
DEIDVKVLKY DRERNRVSLG LKQLGEDPWV AIKARYPEST RVTARVTNLT DYGCFAELEE
GVEGLVHVSE MDWTNKNIHP SKVVQVGDEV EVMVLDIDEE RRRISLGIKQ CKSNPWEDFS
GQFNKGDKIS GTIKSITDFG IFIGLDGGID GLVHLSDISW NEVGEEAVRR FKKGDELDTV
ILSVDPERER ISLGIKQLES DPFSEYVTVN DKGAIVRGIV KEVDAKGAII TLADDIEATL
KASEISRDRV EDARNVLKEG EEIEAKIISV DRKSRVISLS IKSKDVEDEK EAIQSLRSKP
EVAESTGPTT IGDLLRAQME KQN