| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3619 |
|---|
| Symbol | |
|---|
| ID | 3369154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4303040 |
|---|
| End bp | 4304713 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637653978 |
|---|
| Product | helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal |
|---|
| Protein accession | YP_236689 |
|---|
| Protein GI | 66046848 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.219568 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGG AAATCGGCGG CTTCGCCGCT CTCGAACTTC ATCCAAATAT CGTTGCAGCA
GTCGTCGCCA CTGGCTACGA AGAGCCTTCG GCCATTCAGC AGCAATCGAT CCCGATTATT
CTCGCCGGTC ACGACATGAT TGGTCAGGCG CAAACCGGTA CGGGTAAAAC CGCCGCGTTC
GCACTGCCTA TCCTGCATCG GATCGACCCG AGCAAGCGCG AGCCGCAAGC ACTGATCCTG
GCCCCGACCC GCGAACTGGC ACTTCAGGTT GCCACCGCGT TCGAGACCTA CGCAAAACAA
ATGCCGGGCG TGACCGTTGT AGCGGTCTAC GGCGGCGCGC CGATGGGCCC TCAGCTCAAG
GCTATCCGCA ACGGCGCACA GATCGTCGTC GCTACCCCGG GCCGTCTCTG CGACCACCTG
CGTCGTGACG AGAAAGTCCT GGCGACCGTG AACCACCTGG TTCTCGACGA AGCGGACGAA
ATGCTCAAGC TGGGCTTCAT GGACGACCTC GAAGTCATCT TCAAGGCCAT GCCTGAAACC
CGCCAGACCG TACTGTTCTC GGCCACGCTG CCACAGTCGA TCCGTGCCAT CGCCGAACGC
CATCTGCGCG ATCCGAAGCA CGTCAAGATC CAGACCAAGA CCCAGACCGT TACCGCGATC
GAGCAGGCTC ACCTGCTGGT TCACGCTGAC CAGAAGACCT CGGCCGTACT GAGCCTGCTG
GAAGTCGAAG ACTTCGACGC CCTGATCATG TTCGTCCGCA CCAAGCAGGC GACCCTGGAT
CTGGCCAGTG CTCTTGAAGC CAAAGGCTAC AAGGCTGCCG CACTGAACGG CGACATCGCC
CAGAACCAGC GCGAGCGCGT TATCGAATCC CTCAAGGATG GCCGTCTGGA CATCGTTGTG
GCGACCGACG TTGCTGCCCG TGGTCTTGAC GTTCCGCGTA TCACCCACGT CTTCAACGTG
GACATGCCTT ACGATCCGGA GTCCTACGTT CACCGTATCG GCCGTACCGG TCGTGCCGGT
CGCGAAGGTC GCGCACTGCT GCTGGTGACG CCTCGTGAGC GCCGCATGCT GCAAGTGATC
GAGCGTGTTA CCGGTCAGAA GGTTGCGGAA GTCCGCCTGC CGGATGCCCA GGCCGTTCTG
GATGCGCGCA TCAAGAAACT GACCAACAGC CTGTCGCCGC TGGTCGCTGA TGCCGAATCG
ACTCACGGTG ATCTGCTCGA TCGTCTGACT GCCGACATCG GCTGCAGCCC TCGCGCGCTT
GCCGCTGCAC TGCTGCGCAA GGCTACCAAC GGTCAGGCAC TGACCCTGGC AGCCATCGAG
CGCGAGCGTC CACTGGTTCC GAACAACGCC CCGCGCGGTG ATCGTCCAGA GCGCAGCAGC
GACCGTGGTG ATCGTCCTGA GCGTGAGCGT CGTGCGCCGG TTCCATTGGC CGAAGGCCGT
GCTCGTTGCC GTACCGCGCT GGGTGCGCGT GATGGTATCG CTGCCAAGAA CCTGCTGGGT
GCCATTCTCA ACGAAGGCGG CCTGGCCCGC GAAGCGATCG GCCGTATCCA GGTCCGTGAC
AGCTTCAGCC TGGTCGAACT GCCGGAAGAT GGTCTTGAGC GTCTGCTGAC CAAGCTCAAG
GACACCCGTG TTGCTGGCAA GCAGCTCAAG CTGCGTCGCT ATCGCGAAGA CTGA
|
|---|
| Protein sequence | MTQEIGGFAA LELHPNIVAA VVATGYEEPS AIQQQSIPII LAGHDMIGQA QTGTGKTAAF
ALPILHRIDP SKREPQALIL APTRELALQV ATAFETYAKQ MPGVTVVAVY GGAPMGPQLK
AIRNGAQIVV ATPGRLCDHL RRDEKVLATV NHLVLDEADE MLKLGFMDDL EVIFKAMPET
RQTVLFSATL PQSIRAIAER HLRDPKHVKI QTKTQTVTAI EQAHLLVHAD QKTSAVLSLL
EVEDFDALIM FVRTKQATLD LASALEAKGY KAAALNGDIA QNQRERVIES LKDGRLDIVV
ATDVAARGLD VPRITHVFNV DMPYDPESYV HRIGRTGRAG REGRALLLVT PRERRMLQVI
ERVTGQKVAE VRLPDAQAVL DARIKKLTNS LSPLVADAES THGDLLDRLT ADIGCSPRAL
AAALLRKATN GQALTLAAIE RERPLVPNNA PRGDRPERSS DRGDRPERER RAPVPLAEGR
ARCRTALGAR DGIAAKNLLG AILNEGGLAR EAIGRIQVRD SFSLVELPED GLERLLTKLK
DTRVAGKQLK LRRYRED
|
|---|
| |