| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3504 |
|---|
| Symbol | |
|---|
| ID | 3369031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4177750 |
|---|
| End bp | 4179987 |
|---|
| Gene Length | 2238 bp |
|---|
| Protein Length | 745 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637653855 |
|---|
| Product | GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal |
|---|
| Protein accession | YP_236574 |
|---|
| Protein GI | 66046733 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.280312 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAC TCGACAAAGA CGCCTTTGAA GTCCTTCTGG CCAATTGTGC GGATGAGCCC
ATTCAGTTTC CCGGCGCCAT TCAACCCCAT GGCCTGCTGT TTACCCTTGC AGAGCCCGAG
CTGACGATCC TGCAAGTCAG CGCCAACGTG CAGACTGTGC TGGGTCATGT GCCCGAGCAG
TTGCTCGGCA AGGGGCTGGA CTGTGTGCTG GGCGCTGGCT GGGCCGAGGT GATCAGAAGC
GCCAGTGCCC ATGATTCGTT CATCGACGCG CAACGCCTGC TGATGTCGAT CAACGGCATC
GAGTTCGAAG CCTTGTTACA CCGTCATCAG GGCGTTCTGG TGCTGGAACT CGAAATTCAG
GGCAAGGATG CGCAGTCGGT GAGTTATTCC GAGCGCACCG GCAACATGGG TCGCATGTTG
CGTCAACTGC ACGCTGCGAG TGATCTGCAG ACCCTGTATG AAGTCAGTGT CCGCGAGATC
CAGAAAATGA CCGGTTACGA CCGGGTGCTG ATCTACCGCT TCGAAGAGGA GGGCCATGGC
CAGGTGATCG CCGAAGCGTC GGCGCCGTCC ATGGAGCTTT TCAACGGTCT GTTTTTCCCG
GCATCGGACA TTCCCGAGCA GGCACGCGAA CTGTATCGCC GCAACTGGCT GCGCATTATT
CCCGATGCCG ATTACATCCC GGTGCCCCTG GTGCCTCAAC TGCGCCCGGA CACTCAGCAG
CAGCTTGATC TGAGTTTTTC GACGTTGCGC AGTGTTTCAC CGATCCACTG CCAGTACATG
AAGAACATGG GCGTGCTGTC GTCCATGAGT GTGTCGCTGA TTCAGAGCGG CAAGTTGTGG
GGATTGATCA GTTGCGGCAA CCGCACGCCG CTGTACGTGT CTCACGAGTT GCGCAGTGCC
TGCCAGGCGA TAGGCCAGGT GCTGTCGCTG CAGATCAGCG CCATGGAAGC GCTGGAAATA
AGCCGTCAGC GAGAGGCGAA GGTCAGGGCG CTCGAGCAAT TGAATCTGGC CATGGCCGGG
TCCGAAGAAA ACGTCTTCGA TGGCCTGGCG CAGCAACCCC AGTTGTTGAT GGATCTGGTC
GGCGCGACCG GCGTCGCCAT CATCGAAGAC CGGCAAACGC ATTGTTTCGG CATCTGCCCT
GAGCCGTCCG ACATACGTGC ATTGCATGCC TGGATGATCG CTGGTGGCGA ACCAGTGTAT
GCCAGTCATC ATCTATCCAG TGTCTATGCG CCTGCCGAGG CTTATCAGCC AGTCGCCAGC
GGCGTATTGG CGATGAGCCT GCCAAAGCCG GTCGACAATG GCGTTATCTG GTTTCGTCCC
GAGGTCAAGG AAACGGTCCA GTGGAGCGGT GATCCTAAAA AGCCATTGAA CATGGAAAGC
TCGGCGGGCG GCATGCGTCT TCGGCCGCGT ACCTCGTTTG AGATCTGGAA GGTCGAGATG
ACCGGGATCG CTACGAAGTG GAGCTACGGC GATGTGTTCG CCGCCAATGA CCTGCGCCGC
TCCGCCCTGG AAAATGACCT CGCCCGTCAG GTGCGCAGGG AGCAACAGGC TGTTCGCGCG
CGTGACGAGC TGGTAGCGGT CGTGTCCCAT GACTTGCGTA ACCCGATGAC GGTCATTTCC
ATGCTCTGCG GGATGATGCA GAAGTCGTTC AGCTCCGATG GGCCGCATAC GTCGCGACGT
ATTTCCACGG CAATCGATAC CATGCAGCAA GCGGCCAGCC GCATGAATGT GTTACTCGAA
GACCTGCTCG ACACCTCGAA AATCGAAGCG GGCCGCTACA CGATTACGCC GCAGCCACTG
GAAGTCAGCC AGATATTCGA GGAGGCCTAT ACCTTGCTGG CCCCGCTGGC GATGGACAAA
TCCATCGAGA TCTCCTTCAA CGCCGAGCCT GACCTCAAGG TGCAGGCCGA CCCGGAGCGT
CTTTTCCAGG TGCTGTCCAA CCTGATCGGC AACGCCATCA AGTTCACCCC GAAAATGGGT
ACGATCGGTG TGGCGGCAAT GTCCAACGGC ACTGAAATCG TATTCACCGT ACGGGACTCC
GGCGAGGGCA TCCCTCCCGA GCAGTTGCCA CACATCTTCG AGCGCTACTG GACCGTCAAG
GAAGGCAACC CGACCGGCAC CGGCCTGGGC CTGTACATCT CCCAGGGCAT CATCAAGGCC
CACGGCGGCG AACTGGCTGC GCAAAGCCAG GTGGGCGAGG GCAGCGAGTT CCGCTTCACG
GTGCCAATGG CGGTTTGA
|
|---|
| Protein sequence | MSQLDKDAFE VLLANCADEP IQFPGAIQPH GLLFTLAEPE LTILQVSANV QTVLGHVPEQ
LLGKGLDCVL GAGWAEVIRS ASAHDSFIDA QRLLMSINGI EFEALLHRHQ GVLVLELEIQ
GKDAQSVSYS ERTGNMGRML RQLHAASDLQ TLYEVSVREI QKMTGYDRVL IYRFEEEGHG
QVIAEASAPS MELFNGLFFP ASDIPEQARE LYRRNWLRII PDADYIPVPL VPQLRPDTQQ
QLDLSFSTLR SVSPIHCQYM KNMGVLSSMS VSLIQSGKLW GLISCGNRTP LYVSHELRSA
CQAIGQVLSL QISAMEALEI SRQREAKVRA LEQLNLAMAG SEENVFDGLA QQPQLLMDLV
GATGVAIIED RQTHCFGICP EPSDIRALHA WMIAGGEPVY ASHHLSSVYA PAEAYQPVAS
GVLAMSLPKP VDNGVIWFRP EVKETVQWSG DPKKPLNMES SAGGMRLRPR TSFEIWKVEM
TGIATKWSYG DVFAANDLRR SALENDLARQ VRREQQAVRA RDELVAVVSH DLRNPMTVIS
MLCGMMQKSF SSDGPHTSRR ISTAIDTMQQ AASRMNVLLE DLLDTSKIEA GRYTITPQPL
EVSQIFEEAY TLLAPLAMDK SIEISFNAEP DLKVQADPER LFQVLSNLIG NAIKFTPKMG
TIGVAAMSNG TEIVFTVRDS GEGIPPEQLP HIFERYWTVK EGNPTGTGLG LYISQGIIKA
HGGELAAQSQ VGEGSEFRFT VPMAV
|
|---|
| |