Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_3388 |
Symbol | |
ID | 3368915 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 4046621 |
End bp | 4048594 |
Gene Length | 1974 bp |
Protein Length | 657 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637653739 |
Product | cytochrome c-type biogenesis protein CcmF |
Protein accession | YP_236458 |
Protein GI | 66046617 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1138] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0609216 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTCCCG AACTCGGCCA TCTGGCCATG ATTATGGCAC TCGGCTTTGC GCTGGTGCAG GCCATCATTC CGCTGATCGG CGCGTGGCGC GGTGACCGCT TGTGGATGAG CCTGGCCCGT CCGGCAGCCT GGGGCCAGTT CAGCTTTCTG ATCTTCGCCT TCGGTTGCCT GACCTACGCG TTCATGGTCG ACGACTTCTC TGTCGCCTAC GTTGCACAGA ACTCCAACAC CGCGCTGCCC TGGTACTACA AGTTCAGCGC CGTGTGGGGC GCGCATGAAG GTTCGTTGCT GCTTTGGGCA TTGATTCTCG GTGGCTGGAC CTTCGCCGTG TCGGTGTTTT CCCGGCAACT GCCGCAGGTG ATGCTGGCGC GGGTCCTCGC CGTGATGGGC ATGATCAGCC TGGGTTTCCT GTCGTTTCTG ATCCTCACCT CAAATCCGTT CGCGCGTCTG TTGCCGCAGA TGCCCGCGAA TGGACGTGAT CTGAACCCGT TGTTGCAGGA TATTGGCCTT ATCGTGCATC CGCCGATGCT GTACATGGGC TATGTCGGCT TCTCCGTGGC GTTTGCATTC GCCATCGCCG CCTTGCTCGG CGGTCGACTC GACGCTGCCT GGGCGCGCTG GTCCAGGCCG TGGACGCTGG TGGCCTGGGC CTTTCTCGGC ATCGGCATCA GCCTGGGCTC ATGGTGGGCG TATTACGAGC TGGGCTGGGG CGGCTGGTGG TTCTGGGACC CGGTGGAAAA CGCCTCGTTC ATGCCTTGGC TGGTCGGCAC TGCGCTGATT CACTCGCTGG CGGTCACGGA AAAACGTGGC GTGTTCAAGA GCTGGACGGT ATTGCTGGCC ATTGCTGCGT TTTCACTGAG CCTGCTGGGC ACGTTCCTGG TCCGTTCCGG GGTGCTGACC TCCGTGCACG CCTTTGCCTC GGACCCGGCG CGCGGCGTGT TCATCCTGAT GTTCCTGCTG GTCGTGGTGG GTGGCTCGCT GACCCTGTTC GCGATTCGCG CACCGGTGGT CAAAAGCCAG GTCGGATTCG GCCTGTGGTC GCGGGAAACC CTGCTGCTGG GCAATAACCT GTTGCTGGTG GTTGCCGCGT CCATGATTCT GCTGGGCACC CTTTATCCGC TGGTGATCGA TGCCATGAGC GGCGCCAAGA TGTCGGTCGG GCCGCCGTAC TTCAATACAC TGTTCGTGCC ATTGATGGGC TTGCTGCTGG TGGTGATGGC GGTCGGCGTA CTGGTGCGCT GGAAGGACAC GCCGTTGAAA TGGCTGCTCG GCATGCTGGC CCCGGTACTG GTCGGCAGCG TCGTCCTGGC GGTGCTGGCC GGTCTGCTGC TGGGCGATTT CCAGTGGGCG GTGCTGGCGA CCCTGATGCT CGCCGCCTGG GTGCTGCTGG CCGGGGTTCG CGACCTGCTC GACAAGACTC GCCACAAGGG GCTGATCAGC GGCGCACGCA GTCTGACCCG CAGCTACTGG GGCATGCAGC TGGCGCACCT TGGCATTGTC GTGTGCGCGC TGGGTGTGGT GCTGTCGAGC CAGAACAGCG CCGAGCGCGA TTTGCGCATG GCCCCCGGCG AGTCCACCGA ACTGGGTGGG TATACCTTTG CCTTCGAGGG CGCTCGGCAT TATGAAGGGC CGAACTTCAC CTCGGATCGG GGCACCGTTC GCGTGCTGCG CAATGGCGTT CAACTGACCG AACTGCACCC GGAGAAGCGC TTCTACACCG TGCAGCAGTC GATGATGACC GAAGCGGGCA TTGATGCCGG TTTCAGCCGT GACCTGTATG TCGCCTTGGG TGAACCGCTG GGCGATGGCG CGTGGGCCGT TCGGGTTCAT GTCAAACCGT TTGTGCGCTG GATCTGGCTT GGCGGCCTGC TGACCGGTCT GGGCGGGGTG CTGGCGGCGC TGGACCGGCG TTATCGCACC CGGGTGAAGA ACAAGGTGCG CGAGGCGTTG GGTATGTCGG GAGCTGCACA ATGA
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Protein sequence | MIPELGHLAM IMALGFALVQ AIIPLIGAWR GDRLWMSLAR PAAWGQFSFL IFAFGCLTYA FMVDDFSVAY VAQNSNTALP WYYKFSAVWG AHEGSLLLWA LILGGWTFAV SVFSRQLPQV MLARVLAVMG MISLGFLSFL ILTSNPFARL LPQMPANGRD LNPLLQDIGL IVHPPMLYMG YVGFSVAFAF AIAALLGGRL DAAWARWSRP WTLVAWAFLG IGISLGSWWA YYELGWGGWW FWDPVENASF MPWLVGTALI HSLAVTEKRG VFKSWTVLLA IAAFSLSLLG TFLVRSGVLT SVHAFASDPA RGVFILMFLL VVVGGSLTLF AIRAPVVKSQ VGFGLWSRET LLLGNNLLLV VAASMILLGT LYPLVIDAMS GAKMSVGPPY FNTLFVPLMG LLLVVMAVGV LVRWKDTPLK WLLGMLAPVL VGSVVLAVLA GLLLGDFQWA VLATLMLAAW VLLAGVRDLL DKTRHKGLIS GARSLTRSYW GMQLAHLGIV VCALGVVLSS QNSAERDLRM APGESTELGG YTFAFEGARH YEGPNFTSDR GTVRVLRNGV QLTELHPEKR FYTVQQSMMT EAGIDAGFSR DLYVALGEPL GDGAWAVRVH VKPFVRWIWL GGLLTGLGGV LAALDRRYRT RVKNKVREAL GMSGAAQ
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