| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3385 |
|---|
| Symbol | |
|---|
| ID | 3368912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4044431 |
|---|
| End bp | 4045624 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637653736 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_236455 |
|---|
| Protein GI | 66046614 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4235] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.469456 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGATT TCTGGATGGC AGCCGGGCTG TTGCTGCTGG TTGCGCTGAG CTTCTTGCTG
ATTCCGCTGC TGCGCGGCCA TCGCGCGCAA CGGGAAGAAG ACCGCACGGC TCTGAACGTG
GCGTTGTATC AGGAGCGACT GAACGAATTG CAGGTTCAGC AGGAACAGGG CGTGTTGTCG
GTGGCGCAAC TGCAGGCTGC ACGTACCGAA GCAGCGCGCG AGCTGCTTGC CGACACCGAA
GGTGCGGAGC CCGACCGGAC TTCGCGCCTG GGCAAGCCCT TGCTGGTGCT TGCTGCGCTG
CTGGTCCCGA TGTTGGGGCT GGCGGGCTAT CTCCAGCTGG GGGCTAGCGA CCGGGTTGAA
CTGAGTCGCG AATTCGCTCG ACCACCGACC TCGCTGGCAG ACATGACCCA GCGTCTGGAG
CGCAGCGTGC AGGCTCAACC GGACTCAGCC GAAAACCTGT ATTTTCTGGC GCGCAGCTAC
ATGGCGCAGA ACCGCCCGGG TGATGCCGCG CAGATGTTCG AGCGTTCGGT AGCGCTGGCC
GGACGGCAGC CCGAGTTGCT CGGACAATGG GCTCAGGCGC TGTATTTCGC CAGCGACAAG
CACTTCACAC CCCAGGTGCA GGCGCTGACC GACGAAGCGC TGCAGGCTGA CCCCAGGGAA
GTCACCAGCC TTGGTCTGCT GGGGATTGCC GCTTTCGAAA CTCAGCGCTA TCAGGCGGCG
GTGGATTACT GGACCCGGTT GCTCGCGGCA CTGCCCGCAG ATGACGCATC GCGTTCGGCA
CTGGAAGGCG GCATTGCCCG CGCCAGAGAT AACCTCGCCA AACGCGCGGC AGACGCGGCG
CCGGCAGTTA AGGCGAAGTC GATAAAAATT CATGTCGAGC TGGCTGCGGC GCTTCAAGGC
AAGGTAAGGC CGAACGACAG CGTGTTCATC TTCGCCCGCG CCATCAATGG CCCGGCGGCG
CCTTTGGCGG TCAAACGCAT TACCGTGGCG GACCTGCCTG CCGAGGTGGA ACTGAGCGAT
GCCGACGCAA TGATGCCGCA ACTGAACCTG TCGAACTTTG CGCAAGTCCA ACTGGTTGCG
CGAGTGTCTC GCGCAGGGCA GCCAACCACC GGTGAGTGGG TCGGCCGCAG TCAGCCACTG
GCCAGTGATA CTGCGGCGCA GCAGGCGTTG ACCATTGACA GTCCGGATAA CTAG
|
|---|
| Protein sequence | MIDFWMAAGL LLLVALSFLL IPLLRGHRAQ REEDRTALNV ALYQERLNEL QVQQEQGVLS
VAQLQAARTE AARELLADTE GAEPDRTSRL GKPLLVLAAL LVPMLGLAGY LQLGASDRVE
LSREFARPPT SLADMTQRLE RSVQAQPDSA ENLYFLARSY MAQNRPGDAA QMFERSVALA
GRQPELLGQW AQALYFASDK HFTPQVQALT DEALQADPRE VTSLGLLGIA AFETQRYQAA
VDYWTRLLAA LPADDASRSA LEGGIARARD NLAKRAADAA PAVKAKSIKI HVELAAALQG
KVRPNDSVFI FARAINGPAA PLAVKRITVA DLPAEVELSD ADAMMPQLNL SNFAQVQLVA
RVSRAGQPTT GEWVGRSQPL ASDTAAQQAL TIDSPDN
|
|---|
| |