| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3380 |
|---|
| Symbol | |
|---|
| ID | 3368907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 4038965 |
|---|
| End bp | 4039849 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637653731 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_236450 |
|---|
| Protein GI | 66046609 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00820812 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC CGATACTGAC ACTGGGCCGC GTGGTCCTGA CCCTGCTGGT TGTCACCCTG
GCCGCCGTGG TCGTATGGCG CATGGTGATG TATTACATGT ATGCGCCGTG GACGCGCGAC
GGGCATATCC GCGCCGATGT CGTGCAGATC GCTCCGGACG TGTCCGGACT GATCCAGAAG
GTTGAAGTCA CTGACAACCA GCCCGTGCAC AAGGGCCAGA TCCTGTTCAC CATCGATCAG
GACCGTTTCC GTCTGGCACT GCGCCAGGCG CAGGCGACGG TCGCCGAACG TCAGGAAACC
TGGGAACAGG CGCGCCGCGA GAACAAGCGT AACCGTGGTC TGGGCAATCT GGTCGCCCGC
GAGCAACTGG AAGAAAGCCA GTCACGCGAA GCTCGGGCCC TTTCGGCGCT GGGCGAATCA
AAGGTTGCAG TGGATGCCGC ACAGTTGAAC CTGGATCGCT CGGTGATCCG CAGTCCGGTG
GACGGCTACC TCAACGACCG CGCGCCCCGC GAACATGAGT TCGTCACTGC CGGGCACCCG
GTGCTTTCGG TGGTCGATTC GACGTCGTTC CACATCGATG GCTATTTCGA GGAAACCAAG
CTCGATGGGA TTCATGTCGG CCAGGGCGTC GACATCCGCG TCATCGGCGA CAGCGCGCGT
CTGACCGGCC ATGTGGTGAG CATCGTTGCC GGTATCGAAG ACCGCGACCG CAGCAGCGGC
TCGAACCTGC TGCCCAACGT CAATCCGGCC TTCAGCTGGG TGCGTCTGGC GCAGCGGATT
CCGGTGCGGA TCGCCTTCGA TGATGTGCCT GCCGACTTCC GCATGATTGC CGGGCGTACC
GCGACGGTGT CGATCATCGA CGACACCCAG GAGCGCAGCC GATGA
|
|---|
| Protein sequence | MKKPILTLGR VVLTLLVVTL AAVVVWRMVM YYMYAPWTRD GHIRADVVQI APDVSGLIQK
VEVTDNQPVH KGQILFTIDQ DRFRLALRQA QATVAERQET WEQARRENKR NRGLGNLVAR
EQLEESQSRE ARALSALGES KVAVDAAQLN LDRSVIRSPV DGYLNDRAPR EHEFVTAGHP
VLSVVDSTSF HIDGYFEETK LDGIHVGQGV DIRVIGDSAR LTGHVVSIVA GIEDRDRSSG
SNLLPNVNPA FSWVRLAQRI PVRIAFDDVP ADFRMIAGRT ATVSIIDDTQ ERSR
|
|---|
| |