| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3333 |
|---|
| Symbol | glcF |
|---|
| ID | 3368860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 3988305 |
|---|
| End bp | 3989537 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637653684 |
|---|
| Product | glycolate oxidase iron-sulfur subunit |
|---|
| Protein accession | YP_236403 |
|---|
| Protein GI | 66046562 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0247] Fe-S oxidoreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0308305 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000758619 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACCA CATTAAGTGA ACACGCCAGA ACCCTGCCGC GCGCCGAAGA AGCCGAACGT
ATCCTGCGCA GTTGTGTGCA TTGCGGTTTC TGCAACGCCA CCTGTCCGAC CTATCAATTG
CTGGGGGATG AGCTGGACGG TCCACGCGGC AGGATCTACC TGATCAAGCA GGTGCTAGAA
GGTCAGCCGG TCACCGAGAA AACCCGTCTG CATCTGGACC GCTGCCTGAG CTGTCGCAAC
TGCGAAACCA CCTGCCCGTC CGGCGTGGAT TACCACAACC TGCTGGACAT CGGCCGCGCG
GCGGTTGAAG ACCTGGCCCC GCGGCCAATC GCCGAACGCA TGCTGCGTGA AGGCTTGCGT
CGGGTCATCC CCCACCCCGG ACTGTTCAGA TCCCTGACCG GCATGGGCCT GAAGTTCAGG
CCATTGCTGC CACAGACCCT GGCCAGCAAG CTGCCGACGA CGGTACACCC TGCCGGCCTT
CGCCCGCACA CCGGTCATGC GCGCCAGGTG CTGCTGCTGG AAGGTTGCGT TCAGCCGGGC
CTGTCGCCCA ACACCAACAG CGCCACGGCG CGGGTGCTGG ATCGTCTGGG CATCGGCATT
ATGGCGGTCA GCCAGGCGGG TTGCTGCGGC GCCGTGGATT ATCACCTCAA CGCACAGCAG
GCCGGGCTGG ACCGGGCGCG GCGCAACATC GATGCGTGGT GGCCTGCGCT ACAGGGCGGT
GCTGAAAGCC TGATCCAGAC GGCCAGTGGC TGCGGAGCCT TCGTCAAGGA CTACGGCCAC
CTGCTGCGCC ATGATCCAGG CTACGCCGAC AAGGCCGAGC AGATCAGCGC GCGAACAAAG
GATCTGGTCG AACTGCTGCG CGACGAGCCC CTGGAAACCC TCGGCATAAA GGCCGAGACG
CGCCTGGCGT TTCACTGCCC GTGTACGCTG CAACACGCGC AAAAACTCGG CGGCGAAGTC
GAGCGCGTCC TGACTCGTCT AGGCTTCAAT CTGACCACAG TGGCGGACGG TCATTTATGC
TGCGGCTCTG CAGGCACCTA CTCCATCACC CAGCCTGCCA TCGCCCGCCA GTTGCGCGAC
AACCGCATGA ACGCGCTGGA GAGCGGCAAG CCGCAGGTCA TCGCCACCGC CAATATCGGT
TGTCAGACCC ATCTGGCCAG CGCCGGCCGA ACGCCAGTGC GGCACTGGAT CGAACTGATC
GACGCGGCAC TTGGCACGCC TGAATCACAC TGA
|
|---|
| Protein sequence | MQTTLSEHAR TLPRAEEAER ILRSCVHCGF CNATCPTYQL LGDELDGPRG RIYLIKQVLE
GQPVTEKTRL HLDRCLSCRN CETTCPSGVD YHNLLDIGRA AVEDLAPRPI AERMLREGLR
RVIPHPGLFR SLTGMGLKFR PLLPQTLASK LPTTVHPAGL RPHTGHARQV LLLEGCVQPG
LSPNTNSATA RVLDRLGIGI MAVSQAGCCG AVDYHLNAQQ AGLDRARRNI DAWWPALQGG
AESLIQTASG CGAFVKDYGH LLRHDPGYAD KAEQISARTK DLVELLRDEP LETLGIKAET
RLAFHCPCTL QHAQKLGGEV ERVLTRLGFN LTTVADGHLC CGSAGTYSIT QPAIARQLRD
NRMNALESGK PQVIATANIG CQTHLASAGR TPVRHWIELI DAALGTPESH
|
|---|
| |