| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3329 |
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| Symbol | |
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| ID | 3368856 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 3981972 |
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| End bp | 3984170 |
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| Gene Length | 2199 bp |
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| Protein Length | 732 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637653680 |
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| Product | PAS:GGDEF |
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| Protein accession | YP_236399 |
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| Protein GI | 66046558 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00020555 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAACACTT ACCCGGTCGG CGATGATGAC GAAGAACGTA TTCGTATCTT GAATGCCTTT
TCGTTGATGG ATACCCCACC TGAGCACGAA TACGATCAGA TCGTGCAAAT GGCATCGCGG
ATTTTCGATT TGCCCATTGT GCTGATTTCT CTGGTTCATC GCGACCGGCA ATTCTTCAAG
GCACGCGTTG GCCTCGATGT CTGCGAAACG GGCCGCGACG TCTCATTCTG CAATTTCGCG
CTCATGGGCC GTAACGTTTT TCTGGTACCG GATGCATTGC AGGATGAGCG GTTCAGCTCA
AACGCCTTGG TAGTCGGCGC TCCCCATATT CGCTTTTATG CCGGGGCGCC GCTGATAACC
GCCAGCGGTC ATGTGCTGGG CAGCCTGTGC CTGATCGACA ATAAACCTCG GGAGACTTTC
TCGGAGCGAG ATCAGCTGGT TCTCCAGGAC CTGGCGGTCA TGATCATCGA GAGAATGGAG
TTGCGTCGGC TCACGCTCGA GAATGAAGAC AGCCACACCC GCTTTATGAA TATCACCTCG
ACTTCACCCG ACGCGATCAT CTGCTCGGAC AGCAAAAACC GGATCATCTC ATGGAACAAC
TCGGCCGAGA TCATTTTCGG GCATCGATCC GAGGACGCCA TGGGAAAGCC TCTCGACATC
ATTATTCCGC CCGAAATGCG CTCCAGGCAC CATGCCGGTC TGTCGAGGGT GGCTGCAGGC
GGTCCGGCCT CCATCATCGG AAAGTCCATC AACCTGACGG CCGTCCATCG CGACGGTCAT
ACCATCCCCA TCGAGCTGTC GCTCTCACAA TGGACGTCTG CCGGCGAGCC ACAATTCGGA
GCGATCATTC GTGACATCAC CCAGCGTGTC GAGGCGGACA AATTACTCAA GCATGCGGCC
GAATACGATC ACCTGACCGG GCTTGCCAAT CGATCGACGC TCAAGAGGCG GATCAAGGAG
GCGTGCGATG CTCAGCTTTC AGCAGCCATC CTGCTGATCG ATCTGGACGG TTTCAAGGAC
GTCAACGACA CGTTGGGCCA CGCTGCGGGT GATTTTGTGC TCAAGGTGAC CTCTCACCGT
CTTCGCGAAC ACGTACCGGC CTGCCATATG GTCTCGCGTC TGGGCGGCGA TGAATTTGTC
GTGTTCCTGT CCGAAACGGC AGACCCCGAC AAGGCGATCA AGCTGGGCCT GGAGCTCATC
GCGGTCATCG AGGAGCCGAT AGAATTTGAA GACAATTCAA TCTATATCGG CGCCAGCATC
GGCGTCTCCG TAAGGTGTGG CTCCGACTAC GATGAGGAGC AAATGCTCGG CAATGCGGAT
CTGGCGCTCT ACCAGGCCAA GTCTGACGGC CGCTCCCTGG TACGCACCTT CACCTCCGAG
CATCGACAGA CCGCGTCAAG AAGAGGCGCG CTCAGCTCAT CGATGCGTCA GGCGTGGGCC
AACAAAGAGT TCGAGCTGTA CTACCAACCT CAGGTACGAC TTGCGGATGG TCGTATCACC
GGAGCCGAAG CCCTTATACG CTGGAACCAT CCGACACTGG GTGTCGTGTC CCCTGCGGTT
TTTCTACCGG CACTGGAAGC CAGTCTTCTT GCGGTGCCGG TGGGCGAATG GATACTGCGT
TCAGCCTGTG AGCAGGCAGC GCAATGGCGA AATACCGGCT GCGAGGAATT CCGCATCGGC
GTCAACCTGT TCGCCGCGCA GTTTCGCATG CGGGACTTTG CCGAAATGGT TGAAAGCGCG
CTTGAAGACT TTTCCTTGCC GGCACACTCA CTCGAACTGG AAATCACGGA AAACATCATC
CTGCGAAACG AACAGCGCAT TATGGAACCG CTGCGCCACC TTCGCTCATT GGGTGTGGGC
ATCGCATTCG ATGATTTCGG TACCGGCTAT GCGTCCCTGA GCCTGCTGAA AGACTATCCG
GTGACACGAC TGAAGATCGA CCGCTCATTC GTGAGTGGCG TGGAGCGCAG CAAAAAAGAC
GAAGTCATCG TCGAGGCCGT CGTCAGGCTG GCAAACGGCT TCAATCTTCA GGTCACGGCA
GAAGGCATAG AAACCCGTGA GCAGGAAAGT CTGATGCGCC ATTATGTGTG CGACGAAGGC
CAGGGCTATC TGTATGGTCG CCCCATGCCG GCGCATGAAT TCACCAAGCG TTATATCTCT
TCTCACAATT GGCACGCTGA CGTGCTCAAG CACAACTGA
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| Protein sequence | MNTYPVGDDD EERIRILNAF SLMDTPPEHE YDQIVQMASR IFDLPIVLIS LVHRDRQFFK
ARVGLDVCET GRDVSFCNFA LMGRNVFLVP DALQDERFSS NALVVGAPHI RFYAGAPLIT
ASGHVLGSLC LIDNKPRETF SERDQLVLQD LAVMIIERME LRRLTLENED SHTRFMNITS
TSPDAIICSD SKNRIISWNN SAEIIFGHRS EDAMGKPLDI IIPPEMRSRH HAGLSRVAAG
GPASIIGKSI NLTAVHRDGH TIPIELSLSQ WTSAGEPQFG AIIRDITQRV EADKLLKHAA
EYDHLTGLAN RSTLKRRIKE ACDAQLSAAI LLIDLDGFKD VNDTLGHAAG DFVLKVTSHR
LREHVPACHM VSRLGGDEFV VFLSETADPD KAIKLGLELI AVIEEPIEFE DNSIYIGASI
GVSVRCGSDY DEEQMLGNAD LALYQAKSDG RSLVRTFTSE HRQTASRRGA LSSSMRQAWA
NKEFELYYQP QVRLADGRIT GAEALIRWNH PTLGVVSPAV FLPALEASLL AVPVGEWILR
SACEQAAQWR NTGCEEFRIG VNLFAAQFRM RDFAEMVESA LEDFSLPAHS LELEITENII
LRNEQRIMEP LRHLRSLGVG IAFDDFGTGY ASLSLLKDYP VTRLKIDRSF VSGVERSKKD
EVIVEAVVRL ANGFNLQVTA EGIETREQES LMRHYVCDEG QGYLYGRPMP AHEFTKRYIS
SHNWHADVLK HN
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