Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_3329 |
Symbol | |
ID | 3368856 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 3981972 |
End bp | 3984170 |
Gene Length | 2199 bp |
Protein Length | 732 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637653680 |
Product | PAS:GGDEF |
Protein accession | YP_236399 |
Protein GI | 66046558 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00020555 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGAACACTT ACCCGGTCGG CGATGATGAC GAAGAACGTA TTCGTATCTT GAATGCCTTT TCGTTGATGG ATACCCCACC TGAGCACGAA TACGATCAGA TCGTGCAAAT GGCATCGCGG ATTTTCGATT TGCCCATTGT GCTGATTTCT CTGGTTCATC GCGACCGGCA ATTCTTCAAG GCACGCGTTG GCCTCGATGT CTGCGAAACG GGCCGCGACG TCTCATTCTG CAATTTCGCG CTCATGGGCC GTAACGTTTT TCTGGTACCG GATGCATTGC AGGATGAGCG GTTCAGCTCA AACGCCTTGG TAGTCGGCGC TCCCCATATT CGCTTTTATG CCGGGGCGCC GCTGATAACC GCCAGCGGTC ATGTGCTGGG CAGCCTGTGC CTGATCGACA ATAAACCTCG GGAGACTTTC TCGGAGCGAG ATCAGCTGGT TCTCCAGGAC CTGGCGGTCA TGATCATCGA GAGAATGGAG TTGCGTCGGC TCACGCTCGA GAATGAAGAC AGCCACACCC GCTTTATGAA TATCACCTCG ACTTCACCCG ACGCGATCAT CTGCTCGGAC AGCAAAAACC GGATCATCTC ATGGAACAAC TCGGCCGAGA TCATTTTCGG GCATCGATCC GAGGACGCCA TGGGAAAGCC TCTCGACATC ATTATTCCGC CCGAAATGCG CTCCAGGCAC CATGCCGGTC TGTCGAGGGT GGCTGCAGGC GGTCCGGCCT CCATCATCGG AAAGTCCATC AACCTGACGG CCGTCCATCG CGACGGTCAT ACCATCCCCA TCGAGCTGTC GCTCTCACAA TGGACGTCTG CCGGCGAGCC ACAATTCGGA GCGATCATTC GTGACATCAC CCAGCGTGTC GAGGCGGACA AATTACTCAA GCATGCGGCC GAATACGATC ACCTGACCGG GCTTGCCAAT CGATCGACGC TCAAGAGGCG GATCAAGGAG GCGTGCGATG CTCAGCTTTC AGCAGCCATC CTGCTGATCG ATCTGGACGG TTTCAAGGAC GTCAACGACA CGTTGGGCCA CGCTGCGGGT GATTTTGTGC TCAAGGTGAC CTCTCACCGT CTTCGCGAAC ACGTACCGGC CTGCCATATG GTCTCGCGTC TGGGCGGCGA TGAATTTGTC GTGTTCCTGT CCGAAACGGC AGACCCCGAC AAGGCGATCA AGCTGGGCCT GGAGCTCATC GCGGTCATCG AGGAGCCGAT AGAATTTGAA GACAATTCAA TCTATATCGG CGCCAGCATC GGCGTCTCCG TAAGGTGTGG CTCCGACTAC GATGAGGAGC AAATGCTCGG CAATGCGGAT CTGGCGCTCT ACCAGGCCAA GTCTGACGGC CGCTCCCTGG TACGCACCTT CACCTCCGAG CATCGACAGA CCGCGTCAAG AAGAGGCGCG CTCAGCTCAT CGATGCGTCA GGCGTGGGCC AACAAAGAGT TCGAGCTGTA CTACCAACCT CAGGTACGAC TTGCGGATGG TCGTATCACC GGAGCCGAAG CCCTTATACG CTGGAACCAT CCGACACTGG GTGTCGTGTC CCCTGCGGTT TTTCTACCGG CACTGGAAGC CAGTCTTCTT GCGGTGCCGG TGGGCGAATG GATACTGCGT TCAGCCTGTG AGCAGGCAGC GCAATGGCGA AATACCGGCT GCGAGGAATT CCGCATCGGC GTCAACCTGT TCGCCGCGCA GTTTCGCATG CGGGACTTTG CCGAAATGGT TGAAAGCGCG CTTGAAGACT TTTCCTTGCC GGCACACTCA CTCGAACTGG AAATCACGGA AAACATCATC CTGCGAAACG AACAGCGCAT TATGGAACCG CTGCGCCACC TTCGCTCATT GGGTGTGGGC ATCGCATTCG ATGATTTCGG TACCGGCTAT GCGTCCCTGA GCCTGCTGAA AGACTATCCG GTGACACGAC TGAAGATCGA CCGCTCATTC GTGAGTGGCG TGGAGCGCAG CAAAAAAGAC GAAGTCATCG TCGAGGCCGT CGTCAGGCTG GCAAACGGCT TCAATCTTCA GGTCACGGCA GAAGGCATAG AAACCCGTGA GCAGGAAAGT CTGATGCGCC ATTATGTGTG CGACGAAGGC CAGGGCTATC TGTATGGTCG CCCCATGCCG GCGCATGAAT TCACCAAGCG TTATATCTCT TCTCACAATT GGCACGCTGA CGTGCTCAAG CACAACTGA
|
Protein sequence | MNTYPVGDDD EERIRILNAF SLMDTPPEHE YDQIVQMASR IFDLPIVLIS LVHRDRQFFK ARVGLDVCET GRDVSFCNFA LMGRNVFLVP DALQDERFSS NALVVGAPHI RFYAGAPLIT ASGHVLGSLC LIDNKPRETF SERDQLVLQD LAVMIIERME LRRLTLENED SHTRFMNITS TSPDAIICSD SKNRIISWNN SAEIIFGHRS EDAMGKPLDI IIPPEMRSRH HAGLSRVAAG GPASIIGKSI NLTAVHRDGH TIPIELSLSQ WTSAGEPQFG AIIRDITQRV EADKLLKHAA EYDHLTGLAN RSTLKRRIKE ACDAQLSAAI LLIDLDGFKD VNDTLGHAAG DFVLKVTSHR LREHVPACHM VSRLGGDEFV VFLSETADPD KAIKLGLELI AVIEEPIEFE DNSIYIGASI GVSVRCGSDY DEEQMLGNAD LALYQAKSDG RSLVRTFTSE HRQTASRRGA LSSSMRQAWA NKEFELYYQP QVRLADGRIT GAEALIRWNH PTLGVVSPAV FLPALEASLL AVPVGEWILR SACEQAAQWR NTGCEEFRIG VNLFAAQFRM RDFAEMVESA LEDFSLPAHS LELEITENII LRNEQRIMEP LRHLRSLGVG IAFDDFGTGY ASLSLLKDYP VTRLKIDRSF VSGVERSKKD EVIVEAVVRL ANGFNLQVTA EGIETREQES LMRHYVCDEG QGYLYGRPMP AHEFTKRYIS SHNWHADVLK HN
|
| |