| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3328 |
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| Symbol | |
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| ID | 3368855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 3980034 |
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| End bp | 3981680 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637653679 |
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| Product | GGDEF |
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| Protein accession | YP_236398 |
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| Protein GI | 66046557 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00921167 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTCAGGT TAAGTGTCGC AAAGGTATGG AAACTGCATA GAAGGTTTCA CTGCCAATTT
GATGACAATC CTATGAAGCC GCTTTCCTTT ATTTCGACGA GGCTTACACC TTCGGCGCTC
AGCAAAGCGT TGATCGGCTT TATTGCCCTG GTCTGTCTAT CGTTGATCAT GGCCACCGCC
TGGCAGATGA ACCAGTCCAA GCTCGAGCGC TTGGCCACCG CCAGGATTGC GGTGTCCAAT
ATCGTGCTTG CTGCTGAGCA ACAGGCTCAG GACACCCTGC AACAGGCTGA CAACACGCTG
CGAGACCTTG CCGAGCGTGT TGAGCAGGAT GGCGCCGCAG GCGAGCAGCA AAGCCGCTTG
ACCAGGCTGA TGGCTCAAGA CCTGGTGAAC GTCAAAGGGC TTCAGGGGCT GTTCATCTAC
GATGCTCAAG GCAACTGGGT CGCCAACTCC TTTGCCAAGG GCGTGCAGAC CAGAAACAAC
GAAGACCGCG CCTACTTCAT TTATCACCGC GACAACCCTG ACCCGTCCAT TCATATAGGT
TCCATTGTCG AAAGCCGCAA TACGGGGGAC ATGATCATCC CGGTCAGTCG GCGTATCAAT
GCGGCGGATG GCAGTTTTGC AGGCGTTGCC CTGGCCACGG TGCCGGTGAC TTATTTCCAG
GCGTTTTTCC AGCGCATGGA TGTAGACGAC AAGGGCGTGA TCTTCCTCGC TCTGAACAAT
GGCGACCTGC TGGCGCGTAG GCCCACATTA ACCGCACTGA TGACCACCAA TGTGGCCAAG
GGCGATATCT TCACTCGCTA TCTGCCGTAC AGCGACAGCG GCACCGCAGT GATCAACTCC
GTGGTGGATG GGGTGGAAAG GATCTATGCC TATCGGCGTG TGTCAGGATT GCCCATCGTC
GCCGCTGCCG GTATCTCCAG TCAGCATGTG TTCGCGCCCT GGTGGGCCTA TGCACAGCGC
TCCATGACCA TCACCGGCAT CATTATCCTG GCGCTGGTTT TTCTGGGCGT TCTGCTGTAT
CGGCAAATCC AGCAGTTGAT CACTGCAGAG GGGGAACTGA ACATTGCCAG GAACGACCTG
GAGATTATCG CTCACACGGA CAGCCTGACG CACCTGGCCA ATCGACGCTG CTTCGATACG
GCCTTGCAGC AGGAGTGGGG GCGGGCTAGC CGGAATGATG CAACCATCGC AATTATTTTG
CTGGATATCG ACTGGTTCAA ACAATACAAC GACACCTACG GCCATCTGCA GGGTGACGAC
TGCCTGAGGC AAGTAGCGGG GCTGATTGGC AACAGCCTCG ACCGGTCTGG GGATATGGCT
GCACGTTACG GCGGCGAAGA GTTTGTCATT CTGTTGCCTG AAACCGACCT GGCAGGGGCG
CTGAAACTTG CGGAAAAAAT CAGATCATCC ATTGAAGCCA GTTGTATAGA GCACTCGTCC
AGCCCGCTGG GCAGGCTGAG CATCAGCTCG GGCGTGGTGG CGATCAACGC AGCAGAGAAG
AAGGATGCGC ACACCGCTGC GCTGAAGGAA GCGGATCGAC TTCTTTACCT GGCCAAAACC
AAAGGGCGTA ACCGCGTCGA AGGTCGCTCG ATTCAAGGGT GGCAAGCAGA TAGCCATTTT
GCCAGGGTAT CCAGCGCTTC CCCCTGA
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| Protein sequence | MFRLSVAKVW KLHRRFHCQF DDNPMKPLSF ISTRLTPSAL SKALIGFIAL VCLSLIMATA
WQMNQSKLER LATARIAVSN IVLAAEQQAQ DTLQQADNTL RDLAERVEQD GAAGEQQSRL
TRLMAQDLVN VKGLQGLFIY DAQGNWVANS FAKGVQTRNN EDRAYFIYHR DNPDPSIHIG
SIVESRNTGD MIIPVSRRIN AADGSFAGVA LATVPVTYFQ AFFQRMDVDD KGVIFLALNN
GDLLARRPTL TALMTTNVAK GDIFTRYLPY SDSGTAVINS VVDGVERIYA YRRVSGLPIV
AAAGISSQHV FAPWWAYAQR SMTITGIIIL ALVFLGVLLY RQIQQLITAE GELNIARNDL
EIIAHTDSLT HLANRRCFDT ALQQEWGRAS RNDATIAIIL LDIDWFKQYN DTYGHLQGDD
CLRQVAGLIG NSLDRSGDMA ARYGGEEFVI LLPETDLAGA LKLAEKIRSS IEASCIEHSS
SPLGRLSISS GVVAINAAEK KDAHTAALKE ADRLLYLAKT KGRNRVEGRS IQGWQADSHF
ARVSSASP
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