| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3316 |
|---|
| Symbol | |
|---|
| ID | 3368843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 3968246 |
|---|
| End bp | 3968761 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637653667 |
|---|
| Product | ISPsy8, transposase OrfA |
|---|
| Protein accession | YP_236386 |
|---|
| Protein GI | 66046545 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2963] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.395591 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGT ATTCAGAGCA ATTCAAACTC ACCGTCGTCA AAGCGTACCT TGAAGGCAAC
ATCGGCTTTC GCAAGGTGGC CAGCCAGTTC TCGATCGATT TCAGCCTGCT TCGACGCTGG
GTCGCCAATT ACAAGAGCCA TGGGCACACA GGCCATCGCA AGCCTGGTCT TCGGTACAGT
AAAGCCTTCA AACGCTCAGT GCTTGAGCAC AAGCGCGAGC ACGGGCTGTC GCTTCGCCAG
ACCGCAGCGC ATTTTGGTAT TGGTGATCCT GGCCAAATAG TCATTTGGGA ACAGCAGCAT
TACAGTGACG GTCTAGCCCC GCGTGTTCCC ACAAGAAGAA AGCCTGCTGC CATGCCCAAG
AAGCCTTATC CCACCGAACC CGTAACCGCT GACGATACGC ACAAGACACG CGACCAGTTA
ATGGCCGAGC TTGAATACCT GCGCATGGAG AACGCTTACC TAAAAAAGTT GGAAGAGTTG
AAGGAGCAGC AACGACGGCA AAAGAAAAAG CCCTGA
|
|---|
| Protein sequence | MAKYSEQFKL TVVKAYLEGN IGFRKVASQF SIDFSLLRRW VANYKSHGHT GHRKPGLRYS
KAFKRSVLEH KREHGLSLRQ TAAHFGIGDP GQIVIWEQQH YSDGLAPRVP TRRKPAAMPK
KPYPTEPVTA DDTHKTRDQL MAELEYLRME NAYLKKLEEL KEQQRRQKKK P
|
|---|
| |