| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3295 |
|---|
| Symbol | |
|---|
| ID | 3368822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 3942828 |
|---|
| End bp | 3944756 |
|---|
| Gene Length | 1929 bp |
|---|
| Protein Length | 642 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637653646 |
|---|
| Product | SLT |
|---|
| Protein accession | YP_236365 |
|---|
| Protein GI | 66046524 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.505379 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAGTC GTTTGTTCAG CCTTTTATCG TGCCTGCTCC TCTCCGCCAC CGCCGTCCAG
ACTGCTCATG CGGTAGACCT CAACCAACAA CGCAAATATT ACGACGAAGC AAAGCGCGCA
CTGGCCAAAG GCGATTCCGG CCCCTACCAG ATGTACGCCA CGGCCCTGGC CGATTATCCG
CTGGAGCCTT ACCTCGAATA CGACGAACTG ACGGCACGCC TGAAAACGGC AAGCAATCCC
GAAATCGAGA AGTTTCTTGC CGAGCACGGC GACCTGCCGC AAGCCAACTG GATGAAGCTG
CGCTGGTTGC GCTGGCTGGC CGAGCGTGGC GACTGGCAAA CCTTCGTCAA GTATTACGAC
CCGAAGATGA AGTTCGTCGA GCTGGACTGC CTGTACGGGC AGTATCAGCT GAACAGCAAC
AAGCGCGCCG AAGGCTTCGC CAGTGCCGAA AAGCTGTGGA TGACCGGCAA GACTTTACCC
GCTGCCTGTG ACGGTTTCTT TGCCCAGTGG GCGGCCGCCG GCCAGTTGAC CGAACAGAAG
CGCTGGCAGC GCGCCAAGCT GGCGGCACAG ACGCGCAATT ACAGTCTGGC CAGCACGCTG
GTGGACAGCC TCAACTCGCT GGCACCGCAA GGCCGTCTGC TGCTGGCTGT CGCGCAGAAA
CCGGAGATGG TCAGCAACCC GTCGCAATTT GCCCCGGTAG ACGAGGCGAT GTCCGATGTG
GTCGGTCTCG GCCTGCGCCG GCTCGCCAAG CAGGACCCGC AGAAAGCCCT GTCGATGCTC
GATGGCTATG CCGCGACCAT GCATTTCTCC CGCGAAGAGC AGGTCGAGAT TGCCAAGGAA
ATCGGCCTGA CCCTGGCACG TCGTTATGAC GACCGCGCAC TGGAGGTCAT GACCAGATAC
GACCCTGAAT TGCGTGACGA CACCGTGACC GAATGGCGCC TGCGCCTGCT GCTGCGCCTG
GGTCGCTGGG AAGACGCCTA CGAGCTGGCG CGCCGACTGC CCAAGGATCT GGCAGCGACC
AATCGCTGGC GTTACTGGGA AGCGCGCTCT CTGGAACTGG CACAACCCAA CAGCCCGCTG
ATTGCCGCAC TGTACAAGGA TGTCGCCAAG GAGCGTGATT TCTACGGGTT TCTGGCTGCC
GACCGCACTC AAAGCCCCTA CCAGCTCAAC AACAAGCCGC TGGTGCTGAG CCAGGCACTG
ATCAACAAGG TACGCAACAC GCCGGGCGTG CGTCGCGCAC TGGAGTTTCA CGATCGCGGC
GAGATCGTCA ACGGCCGACG CGAGTGGTAT CACGTGAGCC GCCTGTTCAA TCGTGACGAG
ATGGTTGCCC AGGCCAAGCT GGCCTATGAC ATGCAATGGT ATTTCCCGGC AATCCGTACC
ATCAGCCAGG CGCAATACTG GGACGATCTG GATATTCGCT TCCCGATGGC GCACCGCGAC
ACGCTGGTGC GCGAAGCCAA GGTGCGCGGC CTGCATTCGA GCTGGGTGTT CGCCATCACG
CGCCAGGAAA GCGCCTTCAT GGACGATGCC CGCTCGGGCG TCGGCGCCAG CGGGCTGATG
CAACTGATGC CTGCCACCGC CAAGGAGACT GCGCGCAAAT ACAGCATCCC GCTGGCCTCG
CCTCAGCAGG TGCTGGATCC GGACACCAAC ATCCAGCTGG GCGCCGCCTA CCTGAGCTCG
GTGCATGCGC AGTTCAACGG TAATCGGGTG CTCGCTTCAG CGGCCTACAA CGCAGGTCCC
GGGCGCGTGC GCCAATGGCT CAAAGGTGCC AACCATCTGG CCTTCGATGT CTGGGTAGAG
AGCATTCCGT TCGATGAGAC CCGTCAGTAC GTACAGAACG TATTGTCGTA CTCGGTGATC
TACGGCCAGA AACTCAACTC GCCGCAGCCT CTGGTGGACT GGCACGAGCG GTTTTTCGAC
GACCAGTGA
|
|---|
| Protein sequence | MRSRLFSLLS CLLLSATAVQ TAHAVDLNQQ RKYYDEAKRA LAKGDSGPYQ MYATALADYP
LEPYLEYDEL TARLKTASNP EIEKFLAEHG DLPQANWMKL RWLRWLAERG DWQTFVKYYD
PKMKFVELDC LYGQYQLNSN KRAEGFASAE KLWMTGKTLP AACDGFFAQW AAAGQLTEQK
RWQRAKLAAQ TRNYSLASTL VDSLNSLAPQ GRLLLAVAQK PEMVSNPSQF APVDEAMSDV
VGLGLRRLAK QDPQKALSML DGYAATMHFS REEQVEIAKE IGLTLARRYD DRALEVMTRY
DPELRDDTVT EWRLRLLLRL GRWEDAYELA RRLPKDLAAT NRWRYWEARS LELAQPNSPL
IAALYKDVAK ERDFYGFLAA DRTQSPYQLN NKPLVLSQAL INKVRNTPGV RRALEFHDRG
EIVNGRREWY HVSRLFNRDE MVAQAKLAYD MQWYFPAIRT ISQAQYWDDL DIRFPMAHRD
TLVREAKVRG LHSSWVFAIT RQESAFMDDA RSGVGASGLM QLMPATAKET ARKYSIPLAS
PQQVLDPDTN IQLGAAYLSS VHAQFNGNRV LASAAYNAGP GRVRQWLKGA NHLAFDVWVE
SIPFDETRQY VQNVLSYSVI YGQKLNSPQP LVDWHERFFD DQ
|
|---|
| |