| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3237 |
|---|
| Symbol | |
|---|
| ID | 3368764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 3875627 |
|---|
| End bp | 3876328 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637653588 |
|---|
| Product | 3-oxoacid CoA-transferase |
|---|
| Protein accession | YP_236307 |
|---|
| Protein GI | 66046466 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.870367 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGGAC TCGATAAACG AGTAGCGACC TACGAAGAAG CCCTCGCCGG GCTGACCGAC
GACATGACGG TACTCTGCGG CGGCTTCGGC CTGTGCGGCA TCCCGGAAAA TCTCATCGCG
CAGATCAGGC GCATGGGCAT CAAGGGCCTG ACCGTGGTCT CCAACAACTG CGGCGTTGAC
GGCTTCGGAC TCGGCATCCT GCTTGAGGAC CGGCAGATCC GGAAAATGAT TTCGTCCTAC
GTCGGCGAGA ATGCCTTGTT CGAAAAGCAG TTGCTCAGCG GCGAGCTGGA AGTCGAACTC
ACTCCACAAG GCACTCTGGC GGAGAAACTG CGCGCCGGCG GCGCGGGCAT TCCGGCGTTC
TATACCGCCA CCGGTTACGG AACGCCGGTC GCCGAAGGCA AGGAAACCCG CCAGTTCAAC
GGCCGCAACG TGATTCTGGA AGAGGCCATC ACCGGTGACT TCGCCTTGAT CAAGGGCTGG
AAAGCCGACC ACTTCGGCAA TGTCATCTAT CGTCATACCG CACAGAACTT CAACCCGGTG
GTGGCCACCG CCGGACGGAT CACCGTGGTC GAGGTCGAGG AAATCGTCGA ACCCGGCGTG
CTGCTGCCGA CCCAGATCCA CACCCCCGGC ATCTACGTCG ACCGGGTCAT ACAGGGCACT
TTCGAAAAAC GCATCGAACA ACGCACCGTC AGAAAATCCT GA
|
|---|
| Protein sequence | MAGLDKRVAT YEEALAGLTD DMTVLCGGFG LCGIPENLIA QIRRMGIKGL TVVSNNCGVD
GFGLGILLED RQIRKMISSY VGENALFEKQ LLSGELEVEL TPQGTLAEKL RAGGAGIPAF
YTATGYGTPV AEGKETRQFN GRNVILEEAI TGDFALIKGW KADHFGNVIY RHTAQNFNPV
VATAGRITVV EVEEIVEPGV LLPTQIHTPG IYVDRVIQGT FEKRIEQRTV RKS
|
|---|
| |