| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3232 |
|---|
| Symbol | |
|---|
| ID | 3368759 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 3871564 |
|---|
| End bp | 3872652 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637653583 |
|---|
| Product | polysaccharide export protein |
|---|
| Protein accession | YP_236302 |
|---|
| Protein GI | 66046461 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.549213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGAA GCATTACTGC GTTACTGCTG GTCAGCCTGG CGCTGCAAGG CTGTGCATTC
GCGCCGGGGC AACATATGAC GCCGGATGAC GTCACCCTCG ACACGCCGGA CGAACCCCGG
GCACAGTTGA TCGAGGTCAC CCCGAAAACC CTGCAGCAAC AGCAATTGCG CGCCACCGCC
GAGGCCAAAG CCCTGCCGCA GGTGCTGCTC GACTACAGGA CTCCGGAATA CGTGATCGGT
GCTGGCGATA CCTTGCTGGT CACCGTGTTC GAACACCCCG AACTGACCGC GCCGGGCTCA
CAGGACCAGC TGGATGCCAA CACCCGGGAA GTGCTCAATG ACGGCACGCT CTACTTCCCC
TATGTAGGCA GAATCCGCGC GAGTGGCAGA ACGGTCAGCG AGGTTCGTGA GCAGTTACGC
ATGGGCCTGG CGCCGCAATA CACCGAGGTC AAGGTCGACG TCAAAGTGCT GCGCTACAAC
AGCCAGCGAA TACTGCTGTC CGGCTCTTTC AAGGTTCCCG GCCCGCAACC GATTACCAAT
ATTCCGTTGA GCCTGGTGCA GGCGGTGAGT GTCGCCGGTG TCGACCTGAC CGATGCCAAC
CTGGCCGGGC TGACCCTGCG CCGCGAGGGC AAGGACTACC TGATCGACAT CGACTCGCTG
AATCGCCGCG ATTCGCAACT GAGCCGGATC TTCCTGAAGG ACGGCGATTA CCTGCACCTC
AACAGCAACT CGCGAAACAA GATCTACGTG CTGGGCGAGG TCCGTAACCC TCAGGTGATC
TCGTTCGGCA CCACGCGCCT GACCCTGCTC GAGGCGTTGG GAAACTCCGG CGGCCTCAGC
CCGGACAGCG CAGACGGCGA TGCGGTGTAC GTCATACGTG GTGCGGAAGA CTTCGCCCAG
GCGCCCTCCA CCGTCTACCA CCTCAATGCC AAAAAGCCCA CCGCCTACCT GCTGGCGGGG
CAGTTCGAGC TCAAGGCACA GGATGTGGTG TTCGTCGGCC CTGCCGATAT CACCCGCTGG
AGCCGCTTCA TCAGCCAGCT GCTCGGCTCG GCCAGTGTGA TACAGACCGG TGCGGCCTTT
CGCAACTGA
|
|---|
| Protein sequence | MNRSITALLL VSLALQGCAF APGQHMTPDD VTLDTPDEPR AQLIEVTPKT LQQQQLRATA
EAKALPQVLL DYRTPEYVIG AGDTLLVTVF EHPELTAPGS QDQLDANTRE VLNDGTLYFP
YVGRIRASGR TVSEVREQLR MGLAPQYTEV KVDVKVLRYN SQRILLSGSF KVPGPQPITN
IPLSLVQAVS VAGVDLTDAN LAGLTLRREG KDYLIDIDSL NRRDSQLSRI FLKDGDYLHL
NSNSRNKIYV LGEVRNPQVI SFGTTRLTLL EALGNSGGLS PDSADGDAVY VIRGAEDFAQ
APSTVYHLNA KKPTAYLLAG QFELKAQDVV FVGPADITRW SRFISQLLGS ASVIQTGAAF
RN
|
|---|
| |