| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3161 |
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| Symbol | |
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| ID | 3368682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 3788885 |
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| End bp | 3790681 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637653506 |
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| Product | Type I secretion system ATPase, PrtD |
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| Protein accession | YP_236231 |
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| Protein GI | 66046390 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.135174 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCGT TGCCCCAAAG CGCCCGGCCG CCGCTTTATA AAGCGCTGGC TGACTACAAG
AGCGCGTTGA TCGGTGTCGG TTGTTTTACC GCGCTGATCA ACGTGCTGAT GCTCGCCCCA
TCGATTTACA TGCTGCAAGT CTATGACCGC GTACTGACCT CACAGAACCA GACCACCCTG
GCCATGCTGA CGCTGATGGT GGTCGGGTTC TTTGCGTTTA TCGGCCTGCT GGAGATGGTC
CGCAGCTTTG TGGTGATCCG CATCGGCAGT GAGCTGGAAA AGCGTTTCAA TCTGCGCGTC
TATCAGGCTG CGTTCGAGAG CAACCTGCAC GCCGGACAGC GTCAGGCTGG ACAGGCGCTG
GGTGACTTGA CTTTCATCCG CCAGTTTCTC ACCGGGCCGG CGTTGTTCGC GTTCTTCGAC
GCCCCGTGGT TCCCCATCTA CCTGGCGGTG ATCTTCCTTT TTGACCCTTG GCTTGGCGTG
CTCGCCAGCG TAGGCACGGT GTTGCTGGTC GGACTGGCGT GTCTCAACGA ATGGCTGACC
CGCAAACCGC TGGCCGAAGC CAGCGGCTAC TCGCAGCAGT CTGCGCAATT GGCGACCCGA
CACCTGCAAC AGGCCGAGGC GATCCAGGCG ATGGGTATGC TCGAGGTCTT GCGGCGCCGC
TGGTTTCATG TGCATGGGCG CTTTCTGGCC CTGCAAAACC GAGCCAGTGA TACGGGAGCG
GTGATCAGTT CGATCAGCAA GGCCCTGCGT CTGTGCCTGC AGTCGCTGGT GCTGGGCTTG
GGCGCACTGC TGGTGATAAA TGGAGACATG ACCGCCGGCA TGATGATCGC CGGTTCGATC
CTCATGGGTC GGGTTCTGAG CCCTATCGAC CAACTGATCG CCGTCTGGAA GCAATGGAGT
TCTGCACGCC TGGCTTATGG GCGCCTCGAC CAGTTACTCA AGACCTACGC CGAGCCCGCG
CCGCGCATGC CGCTGCCGGC ACCGCGCGGT CAGATCAGTG CGGAACAGGT CAGCGCTGCG
CCTCCCGGCA AAACGTCACC GACGATTCAG CAAGTGAGCT TTCAGTTGCA GGCCGGTGAA
GTGCTCGGCG TGCTGGGCGC ATCCGGCTCC GGCAAATCGA CCCTGGCACG CGTGCTGGTC
GGTGTCTGGC CGGCGCTGGG TGGAACGGTA CGTCTGGACG GGGCCGACAT GCATCGCTGG
GACCGAGAGG CGCTGGGTCC CTATATTGGT TATCTGCCGC AGGATATCGA GCTGTTCGGT
GGCAGCGTGG CGGAAAACAT CGCGCGCTTT CGCGAGGGTG ACGCGAGTGC CGTGGTCGCT
GCCGCGCAAC TGGCGGGCGT ACACGAATTG ATTCTGCGCC TGCCGCAAGG CTACGACACG
CGGCTGGGCG ATGATGGCGC AGGCTTGTCC GGTGGTCAGA AACAGCGCGT CGCGCTGGCC
CGTGCGCTGT ATGGCGATCC GCGACTGGTG GTGCTCGATG AGCCCAATTC CAATCTGGAT
GCCGCGGGTG AAGCGGCGCT GACTCAGGCG ATTGCTGAAC TCAAGACCCG CGGCTGCACC
GTTGTGCTCG TCACCCACCG TACGCAGTCG CTGAACCAGA CCGATCGTCT GCTGGTGCTG
AGCGAAGGTC GCATGCAGGC ATTCGGCGCC ACGGCTCAGG TGCTGCAGGC CTTGTCGGGG
CAGCCATCGT CCACACAAGC ACCGCAAGCG CAGCCTCAAT CGCAATCCCG CCCGGCACCT
GCCGGGCTTT CCATGAGCCG TCAGTACGGC ACGCAGAACA GGCAGTCCGA CGTATGA
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| Protein sequence | MSALPQSARP PLYKALADYK SALIGVGCFT ALINVLMLAP SIYMLQVYDR VLTSQNQTTL
AMLTLMVVGF FAFIGLLEMV RSFVVIRIGS ELEKRFNLRV YQAAFESNLH AGQRQAGQAL
GDLTFIRQFL TGPALFAFFD APWFPIYLAV IFLFDPWLGV LASVGTVLLV GLACLNEWLT
RKPLAEASGY SQQSAQLATR HLQQAEAIQA MGMLEVLRRR WFHVHGRFLA LQNRASDTGA
VISSISKALR LCLQSLVLGL GALLVINGDM TAGMMIAGSI LMGRVLSPID QLIAVWKQWS
SARLAYGRLD QLLKTYAEPA PRMPLPAPRG QISAEQVSAA PPGKTSPTIQ QVSFQLQAGE
VLGVLGASGS GKSTLARVLV GVWPALGGTV RLDGADMHRW DREALGPYIG YLPQDIELFG
GSVAENIARF REGDASAVVA AAQLAGVHEL ILRLPQGYDT RLGDDGAGLS GGQKQRVALA
RALYGDPRLV VLDEPNSNLD AAGEAALTQA IAELKTRGCT VVLVTHRTQS LNQTDRLLVL
SEGRMQAFGA TAQVLQALSG QPSSTQAPQA QPQSQSRPAP AGLSMSRQYG TQNRQSDV
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