| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3160 |
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| Symbol | |
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| ID | 3368681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 3787551 |
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| End bp | 3788888 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637653505 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_236230 |
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| Protein GI | 66046389 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.22456 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.323338 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGCC CTATCGACAC TCATTACGCC GTGCCGGGCA AGGAGCGCGG CGTGCAGTTC
TTTGTTCGTG CCGGCTGGAT TCTCATGTTG GCGGGAGCGG GCAGTTTCTT TCTGTGGGCC
AGTCTTGCTC CTCTGGATCA GGGCATTGCC GTGCAGGGGA CGGTGGTTGT TTCTGGCAAG
CGCAAGGCTG TGCAGTCGCT GGATGGCGGC GTAGTCAGCA AAATTCTGGT CAGTGAAGGT
CAATTGGTGA AAGAGGGCGA ACCGCTGTTT CGCCTTGATC AGACTCAGGT CGAAGCGGAC
GTGCAATCGC TGCGAGCCCA GTATCGAATG GCCTGGGCCA GCCTGGCGCG CTGGCAAAGC
GAGCGCGACA ACCTTGACGA GGTGCGCTTC CCCGCAGAAC TGATTGCCGC CGGGCAGGGG
CAAGACCCCG ACCCTCGGCT GGCGCTGGTG CTTGAAGGGC AGCGCCAGTT ATTCAGCAGC
AGGCGCCAGG CGCTGGCGCG TGAGCAGTCC GGCTTGCAGG CGAGCATCGA GGGTGCCGGA
CTGCAGCTCG CCGGCATGCG CCGGGCCCGT TCGGACCTGC TGGCTCAGGC TGACTCGTTA
CGCAAGCAGC TGAGTAACCT GGAGCCCTTG GCGCAGAACG GGTTCATTCC CGGCAATCGC
CTGCTGGAGT TCCAGCGTCA GCTTTCTCAG GTGCAACAGA GCCTGGCGCA AAACGCAGGC
GAAACCGGAC GTATAGAGCA AGGTATCGTC GAATCGCGGT TACGCCTTCA GCAGCAGCGC
GAGGAGTACC AGAAAGAGGT GCGCAGCCAA TGGGCCGATG CCCAGGTCAA GGCGCTTACC
CTTGAGCAGC AACTGGCCTC GGCCGGTTTC AGTCTGCAAC ACAGCGCCAT CCTTGCGCCG
GCTGATGGCA TCGCCGTCAA TCTGGGCGTG CACACCGAAG GTGCGGTGGT GCGTGCCGGC
GAAACCCTGC TGGAAATCGT CCCACAAGGC ACACGGCTGG AAGTCGAAGG GCGGCTGCCG
GTGCAACTGA TCGACAAGGT CGCCAGCCAT CTGCCGGTCG ACATCCTCTT TACCGCGTTC
AATCAAAGCC GCACGCCGCG TGTTTCCGGT GAGGTGAGCC TGATTTCCGC CGACCAGATG
CAGGATGAAA AAACCGGCCA GCCGTATTAC GTGCTGCGTA CCTCGGTGGG CGACGCGGCG
CTGGAAAAAC TCAACGGGCT GGTGATCAAA CCCGGCATGC CCGCTGAAAT GTTCGTGCGC
ACGGGTGAGC GCTCGCTGCT CAATTATCTG TTCAAACCTT TGCTGGACCG TGCCGGCTCC
GCGTTGACGG AGGAGTAG
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| Protein sequence | MNSPIDTHYA VPGKERGVQF FVRAGWILML AGAGSFFLWA SLAPLDQGIA VQGTVVVSGK
RKAVQSLDGG VVSKILVSEG QLVKEGEPLF RLDQTQVEAD VQSLRAQYRM AWASLARWQS
ERDNLDEVRF PAELIAAGQG QDPDPRLALV LEGQRQLFSS RRQALAREQS GLQASIEGAG
LQLAGMRRAR SDLLAQADSL RKQLSNLEPL AQNGFIPGNR LLEFQRQLSQ VQQSLAQNAG
ETGRIEQGIV ESRLRLQQQR EEYQKEVRSQ WADAQVKALT LEQQLASAGF SLQHSAILAP
ADGIAVNLGV HTEGAVVRAG ETLLEIVPQG TRLEVEGRLP VQLIDKVASH LPVDILFTAF
NQSRTPRVSG EVSLISADQM QDEKTGQPYY VLRTSVGDAA LEKLNGLVIK PGMPAEMFVR
TGERSLLNYL FKPLLDRAGS ALTEE
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