| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3159 |
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| Symbol | |
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| ID | 3368680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 3786200 |
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| End bp | 3787549 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637653504 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_236229 |
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| Protein GI | 66046388 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.334096 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.115011 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCGTC ATCCCTTTAA AGCCGCTCTG CTGACGGCCA TCCTGCTGGG TACTGCACCT
TTGAGCCAGG CCATGGGCCC GTTTCAGGTC TATGAATTGG CGCTTCGCAA TGATCCGGTT
TATCTGGGCG CACTCAAGGA GCGCGACGCG GGCCTGGAGA ACCGGGTGAT TGGTCGTGCC
GGCTTGTTGC CTCGCGTGTC ATACAGCTAC AACAAGGGGC GCAACGATTC CAAGGCGACC
CTCAAAGGCA GCGCTCAAGA CACCACCGAC CATCGCCACT ACAACAGCTT TGGCTCGAGC
CTGACGGTTC AGCAGCCCTT GATCGATTAC GAGGCGTACG CCAATTACCG CAAGGGGCTG
GCTCAGGCGC TGTTTGCCGA CGAGACCTTT CGCAGCAAGA GCCAGGAATT GCTGGTGCGG
GTGTTGACCC TGTACACCCA GGCACTTTTC GCCCAGGACC AGATCAATAT CGCCCGTGCC
AAGCAGCAGG CGTTCGAGCG CCAGTTCGCG CAGAACCGGC AGATGTTCGA GCGGGGAGAA
GGCACGCGCA CCGATATTCT CGAAGCCGAA TCGCGCAACG AACTGGCGAT TGCCGAGCAG
ATCGAAGCCA GCGATGAGCA GGATGCGGCC TTGCGCGAGC TGGCGGCGTT GTTGGGCGAA
CCGAGTATCG ATGTTGCGCA GCTGGAGCCA TTGAGGGACA GCTTTCAAGC GTTGGTACTG
GCACCGTCCA GTTTTACCGA GTGGCATGCG CTGGCCATGG CCAACAGCCC GATCCTGGCC
TCGCAACGGC AGTCCCTGGA AGTGGCGCGA TACGAGGTGG AACGCAACCG CGCAGGGCAT
CTGCCGACGG TGAACGCCTA CGCAAGTATC CGCCAGAACG AATCGGACAG CGGCAACACC
TACAATCAGC GTTACGACAC CAACACGATA GGCATCGAGC TCAGTCTTCC GTTGTATGCC
GGAGGTGGCA CCAGCGCCTC GGTGCGCCAG GCCAACAGCA AGCGCGAGCA GGCTGAATAC
GAGCTGGAGG GCAAGACCCG GGAAACCCTG ATCGAACTGC GTCGCCAGTT CAACGCCTGT
GCGTCAGGGG TGAACAAGTT GCGCGCCTAC CAGAAAGCGC TGATCTCGGC GCAGGCACTG
GTCGAGTCGA CGCGCCAGAG CATTCTGGGT GGCGAGCGCA TCAGCCTGGA TGCCCTTAAC
GCCGAGCAGC AGCTCTACAG TACCCGTCGC GATCTGGCAA AAGCCCGTTA CGACTATTTG
ATGGCCTGGA TCAAACTGCA TTACTACGCC GGCACCTTGC GCGACACCGA TCTGGCGCGC
ATCGACGAGG CGTTCGTGGT GGCGCGCTGA
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| Protein sequence | MSRHPFKAAL LTAILLGTAP LSQAMGPFQV YELALRNDPV YLGALKERDA GLENRVIGRA
GLLPRVSYSY NKGRNDSKAT LKGSAQDTTD HRHYNSFGSS LTVQQPLIDY EAYANYRKGL
AQALFADETF RSKSQELLVR VLTLYTQALF AQDQINIARA KQQAFERQFA QNRQMFERGE
GTRTDILEAE SRNELAIAEQ IEASDEQDAA LRELAALLGE PSIDVAQLEP LRDSFQALVL
APSSFTEWHA LAMANSPILA SQRQSLEVAR YEVERNRAGH LPTVNAYASI RQNESDSGNT
YNQRYDTNTI GIELSLPLYA GGGTSASVRQ ANSKREQAEY ELEGKTRETL IELRRQFNAC
ASGVNKLRAY QKALISAQAL VESTRQSILG GERISLDALN AEQQLYSTRR DLAKARYDYL
MAWIKLHYYA GTLRDTDLAR IDEAFVVAR
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