Gene Psyr_3138 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_3138 
Symbol 
ID3368659 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp3763772 
End bp3764968 
Gene Length1197 bp 
Protein Length398 aa 
Translation table11 
GC content63% 
IMG OID637653483 
Productmajor facilitator transporter 
Protein accessionYP_236208 
Protein GI66046367 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.82105 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCACT CGTCCCAATC CCCGCACAAC GCTATGACCA TGACCCCGGC CATGGTCATG 
CTGTTCGCCT TCTGCTGCGG CGCGATTGTC GCCAACATCT ACTACGCACA GCCGATCATC
GAGCTGATTG CGCCGGACAT CGGGCTGTCG AGCACGGCGG CCAGTCTGAT TGTCTCGTTG
ACGCAGATCG GTTACGCCCT GGGTTTGTTC TTTCTGGTGC CGCTGGGTGA CTTGCTGGAG
AACCGCAGGC TGATGCTGGT GACGACTGTC GTCGCGATTC TCAGCCTGCT GGGTGCCGCC
TTCGCCGAGC AGCCGAATGT GTTTTTGCTG GTCTCGCTGC TGGTGGGCTT CAGTTCAGTA
TCGGTGCAGA TGCTCATTCC GTTGGCGGCG CATCTGGCTC CGGAGGAGTC GCGTGGGCGG
GTCGTTGGCG GGATCATGGG CGGACTGCTG CTGGGGATTC TGCTGGCGCG GCCGATTGCC
AGTCTGGTGG CCGACCATTT CGGCTGGCGG GCGGTGTTTG GATCGGCGGC CGTGGTGATG
ATCGGCATCA GCGTGGTACT GGCGACCACC ATGCCAAAAC GCCTCCCGGA TCATCGCGCG
TCCTACGGCC AGTTGCTGTT CTCGCTGTGG ACTCTCCTTC GTACCCAGCC GGTGCTGCGT
CAGCGTGCCT TTTATCAGGC GTGCATGTTC GCAACCTTCA GCCTGTTCTG GACCGCCGTC
CCGCTGGAGC TGTCACGCAA TCATGGGCTG TCGCAAACGC AGATCGCGAT CTTCGCCCTG
ATCGGCGCGA TCGGCGCCAT TGCCGCGCCC ATCAGCGGCC GACTGGCAGA CGCTGGCTAC
ACCCGCATCG CCTCACTGGG CGCGCTGCTG TTCGGCGCGC TGAGCTTTCT TCCCGGCCTG
GTTCATCCAG CGTACAGCGT GATTGGCCTG GCCATAACGG GCGTAGTGCT GGATTTCTGC
GTGCAGACCA GCATGGTCCT GGGCCAGCGC ACGGTCTACG CGCTGGATGC CGCCAGCCGC
AGCCGCCTCA ACGCGCTGTA CATGACCAGT ATTTTCATCG GCGGCGCGAT TGGCTCGGCA
GTCGCCAGCC CACTGTTTGA TCACGGTGGC TGGACCTGGG TACTGATCGC CGGCACGGCA
CTGCCGCTGA TTGCACTGCT CGCGCTGCTC AGGGATCGAT CCAGGCAGAA TGCGTAA
 
Protein sequence
MPHSSQSPHN AMTMTPAMVM LFAFCCGAIV ANIYYAQPII ELIAPDIGLS STAASLIVSL 
TQIGYALGLF FLVPLGDLLE NRRLMLVTTV VAILSLLGAA FAEQPNVFLL VSLLVGFSSV
SVQMLIPLAA HLAPEESRGR VVGGIMGGLL LGILLARPIA SLVADHFGWR AVFGSAAVVM
IGISVVLATT MPKRLPDHRA SYGQLLFSLW TLLRTQPVLR QRAFYQACMF ATFSLFWTAV
PLELSRNHGL SQTQIAIFAL IGAIGAIAAP ISGRLADAGY TRIASLGALL FGALSFLPGL
VHPAYSVIGL AITGVVLDFC VQTSMVLGQR TVYALDAASR SRLNALYMTS IFIGGAIGSA
VASPLFDHGG WTWVLIAGTA LPLIALLALL RDRSRQNA