| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3130 |
|---|
| Symbol | |
|---|
| ID | 3368651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 3753133 |
|---|
| End bp | 3754320 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637653475 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_236200 |
|---|
| Protein GI | 66046359 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTTTT CCTTTGCAAC GCTCCTGCGT TCGTGCTGCC GTGTTTCCGG AAATATCCGG
CCGTTGCACT CCCTGTACGC CCAGCCCCAT GTGGTACTGG GTTTCATCTC GCTACTGTCA
CTCAGCGCCT GTTCTGCAGG AAAACCCGCA GAAAAGGCGC TGGTGCGAGT CAGCGCGCAA
CCGGTTGCCT TACTGAACGT TGCCAGCAGT GTGACGCTGA CGGGCGATAT CCAGGCTCGC
AAGGTGACCG AGCAATCGTT TCGTGTCTCC GGCAAGCTGA TCAAGCGCTA CGTGGATGTC
GGGGATCGAG TGCGGGTCGG ACAGGTGCTG GCCAGACTCG ACGCACGCGA GCAAAACACC
GAGCTGGCGT CAGCCCGTAC CGAAGTCGCG GTACGACAGT CGCGGCTGCA CCTCGCCGAA
CAGAACTACC AGCGGCAGCA AGTGCTGCTG CCCAAGGGTT TTACCAACCT CAGTGAATAC
CAGAAGGCCC GCTCCGGCCT CGACAGTGCG CGGGGGGATC TCGCCGCGCT GCAGGCGCAG
CAGGCCAATG CGCGTGACCA GGTCGGTTAT ACCGGGCTGT TCGCAGCAGC CGATGGCATC
GTGACGGCGC GGTATGCCGA AGAAGGTCAG GTGGTTCAGG CCGCCACTGC GATTTTCAGC
GTCGCCCACG ATGGCGAGCG CGAAGCGGTA TTTTCCGCGT ATGAATCACT GCTGCGAGCC
GATCAGAAAG GTGCCGCAGT GACTGTCAGC CCCTTGGGCC AGCCAGGGAC TCAGTTGACC
GGCATCATCA GGGAAATCAC CCCTATCGTC TCCGCTGCAA ATGGCACGTT GCGAGTGCGC
GTTGCTCTGC AGGGCGCCGC TGCGTCGCTC GCGCTGGGCT CCGTGGTCAG CGCTCGCTTG
CAGACGCAGT CGCAATCGGC GTTCGCCCTG CCCTGGTCCG CCTTGAGCCG CACACAAGGA
CAACCGGCAG TCTGGCGGGT GGACGCCCAG GCCAGGGTCA GGCTGACGCC TGTCAAAGTG
CTGCGTTACG AACAGGGTCA GGTCATCGTT TCAGAAGGGC TGTCCGAAGG TGATCGGGTG
GTGTCCCGGG GGCTGCAGTT TCTCTACCCG GGGCAACGGG TAGAGGTCGC AGGGCAAGCG
CAAGCCGAAC AAAGCGTCTC GCTGGCGTCA TCGGGAGCTG CGCAATGA
|
|---|
| Protein sequence | MTFSFATLLR SCCRVSGNIR PLHSLYAQPH VVLGFISLLS LSACSAGKPA EKALVRVSAQ
PVALLNVASS VTLTGDIQAR KVTEQSFRVS GKLIKRYVDV GDRVRVGQVL ARLDAREQNT
ELASARTEVA VRQSRLHLAE QNYQRQQVLL PKGFTNLSEY QKARSGLDSA RGDLAALQAQ
QANARDQVGY TGLFAAADGI VTARYAEEGQ VVQAATAIFS VAHDGEREAV FSAYESLLRA
DQKGAAVTVS PLGQPGTQLT GIIREITPIV SAANGTLRVR VALQGAAASL ALGSVVSARL
QTQSQSAFAL PWSALSRTQG QPAVWRVDAQ ARVRLTPVKV LRYEQGQVIV SEGLSEGDRV
VSRGLQFLYP GQRVEVAGQA QAEQSVSLAS SGAAQ
|
|---|
| |