Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_3075 |
Symbol | |
ID | 3368595 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 3676622 |
End bp | 3678043 |
Gene Length | 1422 bp |
Protein Length | 473 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637653421 |
Product | Type I secretion membrane fusion protein, HlyD |
Protein accession | YP_236147 |
Protein GI | 66046306 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.775261 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTAACG CCGAATCGAC CGGACTACTG CAGCGCTACC GCCGCGTGTG GCGCCAATCT TGGCGTCACC GTCGTGAGAT GGATGCCCCC AAGCGCTTGG CGCATGAAGT TCAGTTTCTG CCCGCTGCGC TGGAACTCCA GGATAAACCC AGTCATCCCG CGCCGCGTGT TTTCATGTGG GCGATCATGT TTTTTGCCGC TCTGGCGTTG CTATGGGCAT GCCTGGGCAA GATTGACGTG GTAGCGACAG CCAGCGGCAA AATCATTCCC AGCGGCAAGA CGAAAACCAT TCAGTCCAGT GAAACCGCTG TGGTCAAGGC GATTCATGTG CGTGACGGGC AATCGGTCAA GGCCGGTCAG TTGCTTTTGG AGCTGGACTC CACATCTGCG GATGCTGATG TCGGACGCGT CCGCAGTGAT TTGCTGGCTG CGCGAATCGA CAGCGCTCGC GCGGCTGCCA TGCTCGACGC AATCAATCAG CGCAAGCCAC CTCGGGATCT GACCGGCACC ATACTGGATG CCGACCCGAT GCATGTATTG GCGGCTGAGC GCTGGCTGCA GGGCCAGTAT CAAGAGTACC GCAGTAGCCT TGACCTGGTA GACGCCGAAA TTCAGCAACG CCAGGCCGAC ATTCAGGCCG CGCGTATTCA AGTCATGAGT TTGCAGAAAA CTTTGCCTAT CGCCACCAAG CTGGCAAGTG ACTACGAAAA CCTCCTGAAA AAGCAGTACA TCGCCCGTCA CGCTTACCTG GAAAAGGAAC AAGCGCGCCT GGACCTCGAA CGCCAACTGA GCGTGCAGCA AGCCAGCGTC CTGCAGTCCA CCGCCGCCCG CCAGGAAGCA GAGCGCCGCC GCGAAGGCGT GGTCGCCCAG ACCCGCCGCG CCATGCTTGA CCTGTTGCAG CAAGCCGATC AAAAGATCGC ATCTTTCAAT CAGGACCTGA CCAAGGCTCG CTATCAGGAA GACCTCACCA CCCTCGAAGC GCCGGTAGAC GGCACCGTCC AGCAACTGGC CGTGCACACC GTCGGCGGCG TAGTCACCCC CGCACAACCG CTGATGGTAT TAGTCCCCGA CGGCCAGCCC GTGGAAGTGG AAGCCATGCT GGAAAACAAG GACGTCGGCT TTGTTCGCGC CGGGCAGGCC GTTACCGTCA AGGTCGAAAC GTTCACCTTC ACCAAGTACG GCACGATAGA AGGCGAAGTC ATCAGCGTCT CCAACGACGC CATCGAAGAT GAAAAGCGCG GCTTGATCTA CAGCAGCAAG ATTCGTCTTA ACAGCGATAC GCTGAATGTG AATGGCGTGG ACATCAAGTT GTCGCCGGGC ATGGCGGTGA CGGCGGAAGT GACGACGAAC AAGCGGCGGG TGATTGAGTA TTTCCTGAGT CCGTTGCAGC AGCATGCGTC GGAGAGTTTC AGGGAGCGGT AG
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Protein sequence | MSNAESTGLL QRYRRVWRQS WRHRREMDAP KRLAHEVQFL PAALELQDKP SHPAPRVFMW AIMFFAALAL LWACLGKIDV VATASGKIIP SGKTKTIQSS ETAVVKAIHV RDGQSVKAGQ LLLELDSTSA DADVGRVRSD LLAARIDSAR AAAMLDAINQ RKPPRDLTGT ILDADPMHVL AAERWLQGQY QEYRSSLDLV DAEIQQRQAD IQAARIQVMS LQKTLPIATK LASDYENLLK KQYIARHAYL EKEQARLDLE RQLSVQQASV LQSTAARQEA ERRREGVVAQ TRRAMLDLLQ QADQKIASFN QDLTKARYQE DLTTLEAPVD GTVQQLAVHT VGGVVTPAQP LMVLVPDGQP VEVEAMLENK DVGFVRAGQA VTVKVETFTF TKYGTIEGEV ISVSNDAIED EKRGLIYSSK IRLNSDTLNV NGVDIKLSPG MAVTAEVTTN KRRVIEYFLS PLQQHASESF RER
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