| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2964 |
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| Symbol | |
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| ID | 3368484 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 3552628 |
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| End bp | 3553278 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637653310 |
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| Product | amino acid ABC transporter permease |
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| Protein accession | YP_236036 |
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| Protein GI | 66046195 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
[TIGR03003] ectoine/hydroxyectoine ABC transporter, permease protein EhuD |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0041365 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.390242 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTTG ATATCGCATT CGCCTGGTCG ATTCTGCCGG AGCTGTTTCA GGGTTTGCTG
GTGACCGTGC AGGTCGTGGT CCTCGGGTTC ATGCTCGCGG TGTTGCTCGG TCTGTTCCTG
GCCCTGACAC TACGCTCGCA GATAACCATC GTGCATCGCC TGAGCAAAGG CTACCTGAGC
TTTTTCCGCA ATACGCCGCT GATGGTCCAG TTGTATGTAC TGTTCTTCGC CCTGCCGCTG
GCGGGCATTA CCTTTCCGGC GGTCACCACC GGTGTGATCG GCCTTGGCTG CTATTACGCG
GCTTACATTG CCGAAGCGTA TCGCGGAGCC ATTGACGACA TCCCGGCCGG ACAATGGGAA
GCCGCACGCG CCCTGGACTT CAATCGTAGC GACACCTGGC GGCGCATCAT CCTGCCGCAG
GCGTTGAAAC CCATGCTGCC GGTGCTCGGC AATTACCTGA TCGGCATGTT CAAGGAAACC
CCGCTTCTGG CGGTGATTAC CATCCCTGAA CTGTTTCAGG CCGCCAAGCA GATCGCCGGC
ATGACCTATC GTTACAACGA ACCGTACACG GTGATGGCGC TGATGTTTCT GGCAATCAGC
GTGCCGACCT CGTTGCTGTT CAAATACCTG GAAAGACGCA GCCATGTCTG A
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| Protein sequence | MEFDIAFAWS ILPELFQGLL VTVQVVVLGF MLAVLLGLFL ALTLRSQITI VHRLSKGYLS
FFRNTPLMVQ LYVLFFALPL AGITFPAVTT GVIGLGCYYA AYIAEAYRGA IDDIPAGQWE
AARALDFNRS DTWRRIILPQ ALKPMLPVLG NYLIGMFKET PLLAVITIPE LFQAAKQIAG
MTYRYNEPYT VMALMFLAIS VPTSLLFKYL ERRSHV
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