| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2958 |
|---|
| Symbol | |
|---|
| ID | 3368478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 3545617 |
|---|
| End bp | 3547248 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637653304 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_236030 |
|---|
| Protein GI | 66046189 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGGC GCCCGCTCCT CTCGCGCCTG CTGTTTACCG CCGTCACAGC CATAACCCTG
CTTGGCTGCT CACCTTCCGG CCAGGACAAC CAGGCAGCCA CAACCCTCAA GGTGGCGTTC
TTCAGAGACA ACACCACGCT GGTCAGCCTT GACCCCTTTC AGGTTTACTG GCTGGAGCAT
CGGGTGGTGC TGCGCAATAT TGCCGAGTCC CTGACCGATC AGGACCCGCA GACCGGCAAG
ATCATTCCCT GGCTGGCGGA GCGCTGGGAA ATCAGTGACA ACGCGCTGGA GTACACCTTT
CACTTGCGCA AGGACGTGAC CTTCAGCAAC GGCACACGTT TCGACGCTCA AGCGGTGAAG
ACGGCCTACG ACGCGGACAA GTCGTTCGCC GCACAATTGC CAGCCACCTT CGGCGCCACT
TACCTCAAAG GTTACGACCA TGCCGAGGTG CTGGACGAGT TCACCATCAA ACTGGTGCTG
GCCCAACCCA ATGCGGGCTT TCTGCAAGCC ACCTCCACCA CCAATCTCGC CATCCTGGCT
CCAGAGTCCT ACGCGCTCAG CGTCAAGCAG CGCTCGCTGG GTGCAATCAT CGGCACCGGG
CCATTCGTGC TGGAGCGCTA TACCCCGGAA AGCGGTTTGC GCCTGATCAA ACGCAAGGGC
TATGCCTGGC CATCGGCCAA TGCGCAGAAC AAGGGCGAAG CGCATCTGGA CGCAGTCGAG
GTCAGCTACG TGCCGGAAGA AAGCGTACGT AACGGCCAGT TCGTTCAGGG GCAGGTCGAT
ATTCTCTGGC CGCGCAACCC GTTCTCCGAG GTGGATCTCA ACCTGTTCAA GTCCAGGGGC
GCGACCATTC AAAGCCGGTC GCTGCCAGGA CCGGCACTGA ACCTGTACCC CAACACACGC
GGCAATCGCA TTCTTGCCGA CCGTAACGTG CGCCAGGCTT TGCAAAAGGC AATCGACCGC
AAGACCTATG CAGCGACGGT CTACAACCCG CAGTTCCCGG TGGTCTCCGG TGTCTTCGAC
ATCACTACAC CGTTTTACAA AAACCAGGCC GACAAGCTTG CCTATGATCC TCAGGGTGCC
GAGCGCTTGC TCGACCAGGC TGGCTGGCAA AAAAATGCCG ACGGCTATCG CTACAAGGAG
GGCAAACGGC TGAAGCTGGC CTACAACCTG TCACCCGCCG AAACCGCTGG CGATGTACTG
ATCCAGGATC AACTGCGCAA GGTGGGCATC GAGCTCAAGC TCAACGTGGT GACCACCGCC
GAATGGGCCG CTGCCAATGC GGCAGGCAAT TATGACCTGA CGTACAACTA CATGACCCGC
GCCGACCCGA TCATCCTGCA GACCATCATC GACCCGCGCA GCGCCAACAG CTCGACTCTG
GCGACCAACC TTTACGCGCC GGAAACACTG CCCAGAGCCC TTGCGCTGTT CGACGCCGGA
CTGACCGCCA CGCAAAGCGA GCAGCGTGCC CGGGCCTATG GCGAGTTGCA GGACTTGCTG
ATCGACGAAG GCTCGGCGTT CCCGGTCTAC GAGCGGGTCT GGCAAGCCGC CACGGCGAAA
AACGTACGCA ACTTCCACTG GACGGCGGAA GGCTTTGCGC TGTTCAACGA CATCGAGTTG
GCAACGCCAT GA
|
|---|
| Protein sequence | MTRRPLLSRL LFTAVTAITL LGCSPSGQDN QAATTLKVAF FRDNTTLVSL DPFQVYWLEH
RVVLRNIAES LTDQDPQTGK IIPWLAERWE ISDNALEYTF HLRKDVTFSN GTRFDAQAVK
TAYDADKSFA AQLPATFGAT YLKGYDHAEV LDEFTIKLVL AQPNAGFLQA TSTTNLAILA
PESYALSVKQ RSLGAIIGTG PFVLERYTPE SGLRLIKRKG YAWPSANAQN KGEAHLDAVE
VSYVPEESVR NGQFVQGQVD ILWPRNPFSE VDLNLFKSRG ATIQSRSLPG PALNLYPNTR
GNRILADRNV RQALQKAIDR KTYAATVYNP QFPVVSGVFD ITTPFYKNQA DKLAYDPQGA
ERLLDQAGWQ KNADGYRYKE GKRLKLAYNL SPAETAGDVL IQDQLRKVGI ELKLNVVTTA
EWAAANAAGN YDLTYNYMTR ADPIILQTII DPRSANSSTL ATNLYAPETL PRALALFDAG
LTATQSEQRA RAYGELQDLL IDEGSAFPVY ERVWQAATAK NVRNFHWTAE GFALFNDIEL
ATP
|
|---|
| |