| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2956 |
|---|
| Symbol | |
|---|
| ID | 3368476 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 3543485 |
|---|
| End bp | 3544594 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637653302 |
|---|
| Product | zinc-containing alcohol dehydrogenase superfamily protein |
|---|
| Protein accession | YP_236028 |
|---|
| Protein GI | 66046187 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1062] Zn-dependent alcohol dehydrogenases, class III |
|---|
| TIGRFAM ID | [TIGR02818] S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00985195 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCTC GTGCTGCAGT TGCATTTGAA CCTGGCAAGC CGCTCCAGAT CGTCGAGATC
GACGTCGAGC CGCCACGCAA GGGCGAAGTG CTGATCAAGA TCACCGATAC CGGTGTATGC
CATACGGATG CTTTCACACT TTCGGGCGAT GATCCGGAAG GCCTGTTCCC GGTAGTACTG
GGCCATGAAG GCGCCGGCAT CGTCATGGAA GTAGGCGAAG GCGTGACCAG CGTGAAAGTC
GGTGACCACG TCATTCCGCT GTACACCGCC GAATGCGGCG AGTGCCTGTT CTGTAAATCG
GGCAAAACCA ACCTGTGCAC CGCTGTGCGC GCCACTCAGG GCAAAGGCGT GATGCCGGAC
GGCACTTCAC GCTTCTCCTA CAACGGCCAA CCCCTGTACC ACTACATGGG TTGCTCGACC
TTCAGCGAGT ACACTGTTGT CGCTGAAGTT TCTGTCGCGA AGATCAATCC AGACGCCAAC
CCCGAGCACG TCTGCCTGCT CGGCTGCGGC GTGACTACCG GCATTGGCGC GGTGCACAAC
ACGGCCAAAG TCCAGCCTGG CGACACAGTC GCGGTATTTG GCCTGGGCGG CATCGGTCTG
GCGGCGATTC AGGGTGCGCG TCAGGCCAAG GCAGGACGCA TCATCGCTAT CGACACCAAC
CCTGCCAAGT TCGAACTGGC CCGTTCGTTT GGCGCTACCG ACTGTGTGAA TCCAAAAGAT
CACGAACAGC CGATCCAGCA GGTGATCATT GAGATGACTG GCTGGGGTGT CGACCACTCC
TTCGAATGTA TCGGTAACGT GCATGTGATG CGCGCTGCGC TCGAATGTGC CCACCGCGGC
TGGGGCCAAT CGATCGTCAT TGGTGTTGCC GGTGCCGGTC AGGAAATCTC GACCCGTCCC
TTCCAGCTGG TCACCGGCCG TACCTGGAAA GGCTCGGCGT TTGGCGGCGT AAAAGGCCGT
AGCCAACTGC CGAAGATGGT TGAAGACGCG ATGAAAGGCG AGATCGAGCT GGCACCTTTT
GTCACTCACA CCATGGGCCT GGATCGCATC AATGAAGCGT TTGACTTGAT GCACGAAGGC
AAGTCGATCC GCACCGTCAT CAAATACTGA
|
|---|
| Protein sequence | MKSRAAVAFE PGKPLQIVEI DVEPPRKGEV LIKITDTGVC HTDAFTLSGD DPEGLFPVVL
GHEGAGIVME VGEGVTSVKV GDHVIPLYTA ECGECLFCKS GKTNLCTAVR ATQGKGVMPD
GTSRFSYNGQ PLYHYMGCST FSEYTVVAEV SVAKINPDAN PEHVCLLGCG VTTGIGAVHN
TAKVQPGDTV AVFGLGGIGL AAIQGARQAK AGRIIAIDTN PAKFELARSF GATDCVNPKD
HEQPIQQVII EMTGWGVDHS FECIGNVHVM RAALECAHRG WGQSIVIGVA GAGQEISTRP
FQLVTGRTWK GSAFGGVKGR SQLPKMVEDA MKGEIELAPF VTHTMGLDRI NEAFDLMHEG
KSIRTVIKY
|
|---|
| |