Gene Psyr_2926 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_2926 
Symbol 
ID3368446 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp3514660 
End bp3515865 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content61% 
IMG OID637653272 
Productmajor facilitator transporter 
Protein accessionYP_235998 
Protein GI66046157 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0235269 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.894143 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTACAG ATGAGAAGCA GGGCAAAACA CTCCCTCTGG GGGCGTTGCT GGCGCTGGCA 
ATGACGGGGT TCATCTGCAT CGTCACCGAG ACCTTGCCTG CGGGTTTGTT GCCGCAGATC
GCCGATGGGC TGGACGTGTC CGCATCATTT GCCGGGCAGA TGGTGACTGT TTATGCGCTG
GGTTCATTGC TGGCCGCCAT TCCACTGACG ATCGCGACGC AAAGCTGGCG GCGCAGAACG
GTCTTGCTGG TGACGATTAT CGGCTTTCTG GTTTTCAACA GCGTCACCGC GTTGTCGTCC
AGTTACGGAC TGACCCTGAT CGCAAGGTTT TTCGCAGGCG TCTCGGCGGG CCTGGCGTGG
AGCCTCATCG CCGGTTACGC ACGGCGCATG GTGGTCCCGC AACTGCAAGG GCGCGCATTG
GCCGTGGCGA TGGTCGGCAC GCCTATCGCC TTGTCGCTGG GCGTACCGCT GGGAACCTGG
CTTGGCGGGT TCATGGGCTG GCGCATGGCG TTTGGCCTGA TGTCCGGGAT GACCGTGCTG
TTGATCATCT GGGTGCTGGT CAAAGTGCCG GACTATCCGG GCAAGTCCTC CTCACAGCGC
ATGGCGTTAC GTCAGGTCTT TTTCACGCCC GGCGTACGCT CGGTGCTGGG CGTGGTTTTC
ACCTGGATGC TGGCTCATAA CCTGCTTTAC ACCTACGTCG CTCCATTCGT TTCCGCGGCG
GGGCTGGCGA ATGATGTGGA CCTGGTATTG CTGGCATTCG GGGTCGCCGC ACTGGCTGGC
ATCTGGGTTA CGGGACGGTT GGTTGATCGC CATCTGCGCA AGACGGTGCT TGCCAGCCTG
GCAACCTTCG CAGCGGTGTC AGTGTTTTTC GGCGTGTTCT CCGGCTCTGC AACGGCCATT
TACATCGGTG CTTTTATCTG GGGCTTGACC TTCGGTGGCG CCGCCACACT GCTGCAAACC
GCGCTCGCCG ATTCGGCAGG CGCGGGCGCA GATGTGGCGC TTTCGATGAA CGTCGTGGTC
TGGAACAGCG CGATCGCAGG CGGCGGGTTA CTGGGTGGCG TGTTGCTTGG CCAATGGGGT
GCGGGATCCT TTCCTTGGGT CTTGCTGATG CTGTTGTTGC TAAGTCTGGT GATCGCACTG
CGCGCAGGTG CTCATGGTTT TGCACGGGGC AGCCGGCTGG ACCGGGAGCA TGTTTTGGCT
GGGTGA
 
Protein sequence
MTTDEKQGKT LPLGALLALA MTGFICIVTE TLPAGLLPQI ADGLDVSASF AGQMVTVYAL 
GSLLAAIPLT IATQSWRRRT VLLVTIIGFL VFNSVTALSS SYGLTLIARF FAGVSAGLAW
SLIAGYARRM VVPQLQGRAL AVAMVGTPIA LSLGVPLGTW LGGFMGWRMA FGLMSGMTVL
LIIWVLVKVP DYPGKSSSQR MALRQVFFTP GVRSVLGVVF TWMLAHNLLY TYVAPFVSAA
GLANDVDLVL LAFGVAALAG IWVTGRLVDR HLRKTVLASL ATFAAVSVFF GVFSGSATAI
YIGAFIWGLT FGGAATLLQT ALADSAGAGA DVALSMNVVV WNSAIAGGGL LGGVLLGQWG
AGSFPWVLLM LLLLSLVIAL RAGAHGFARG SRLDREHVLA G