| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2914 |
|---|
| Symbol | |
|---|
| ID | 3368434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 3497794 |
|---|
| End bp | 3502215 |
|---|
| Gene Length | 4422 bp |
|---|
| Protein Length | 1473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637653260 |
|---|
| Product | ATP-dependent DNA helicase RecQ |
|---|
| Protein accession | YP_235986 |
|---|
| Protein GI | 66046145 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0514] Superfamily II DNA helicase |
|---|
| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0422166 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCAGGCG GCAACTCGGT TCTGGCACCT TGGGTACGCC ATCAATTTCC TGCAACAGGT
AAATTGATTG CTGAACTGCG TGATATTCCC TGCGGGGAGA GCCAATGCGA CTATTGCAGC
ACCACTCATG ATCCTCGCCA CGAGCTCAGG CGCTACTTCG CTCCTATTCA GGACTTTCGG
ACCGAACCAG ACGGACGCTC CTTACAGCAT GACGTGGTGC TGGCAGGCAT GCAGGGCAAG
CACGTGCTCG CGATTCTTGC GACAGGGGGC GGAAAATCCT TGTGCTACCA GTTACCGGCG
CTGAACCGCT TTCACCGCAA CGGCAGCTTG ACGATCATCA TATCGCCGCT GCAGTCGCTG
ATGAAAGATC AGGTCGACGG CCTACTGGCT CGTAACGTCC AATGCGCTGC AACTTTGAAT
GGTCTGTTGA CCATGCCCGA GCGGGCAGAG GTGCTGGAGA AGATCCAATT AGGCGATGTG
GGCATTTTGC TGGTATCCCC CGAGCAGTTT CGCAATATGG CTTTTCGCCG CGCGATCTCC
CAGCGTCAGG TCGGCGCCTG GATCTTCGAT GAGGCGCATT GTTTGTCCAA ATGGGGCGCA
GATTTTCGCC CGGATTACCT CTATGTATCG CGCTTCATCA AGCAGTTCTC TGGGGACGGT
CCGCTCGCGG CGATTGGCTG CTTCACGGCT ACGGCCAAAC CTGATGTGCT TGAGGACATC
GAACAGCATT TCAAAGAGCA GTTGGGCATA ACCTTCAAGC ACTTTATCGG TACCCACGAG
CGTACCAATC TGCACTTCGA GGTCCTGCCG TGTTCTCGCT CAGAAAAGCG CCACCATGCT
CAGACGTTAA TTGAGGAAGA GCTAGGCACC AGGGAGGGTG GCGCGGTGAT ATTCGTTTCA
AGCCGAAAAG GCGCTGAAGA GCTTGCAGAC TTTTTGATCG GCCACGGATG GGCTTGCAAG
TACTTCCACG CTGGGCTGGA GCCACATGAA AAAAAAGATA TTCAGGACGC CTTCAAGGGC
GGGGAACTGA AGATTATCGT GGCCACCAAC GCTTTTGGCA TGGGCGTCGA CAAACCCGAT
ATTCGCTTGG TGATACATGC TGATATTCCG GGGTCGCTCG AGAACTACTT ACAAGAAGCC
GGTCGCGCCG GTCGCGATCA AGGGCAGGCT CGGTGCGTAC TTCTGTATGA CGCTCAGGAC
ATCGAAAACC AGTTCGGGAT GTGCGAACGT TCGAAACTGA CCCTGCGTGA TATCCAGCAA
ATCCTGCGCA AGTTGCGCAA GGAGAGCGAC CGACGCAAGG GCAGCAGGCT CGTCATCACT
GCCGGTGAGG TGCTGATGGA TGAGCATGTT GATACTAGCT TTGAAGCCGG AGAACGTGAT
GCTGAAACCA AGGTAGCCAC GGCAGTGTCC TGGCTTGAGC GAGGGCAGTT TTTAAAACGG
GAGGAGAACC AGACCCAAAT CTTTCCGGCA AGCCTGAAGT TGACTAAGGA GGAGGCCGAT
AAGCGTCTGG CCACCGTTAA GTTATCGGCC AGGCGGCTCG AAGAATTCAG GGCTATCTTG
AGTTATCTGT ACGAAGCTAA TGTCGACGAG CGAATCAACA CCGACGCCTT GATGGCTCTG
ACTAGCCTCA CGTCCGAAGA AGTCACTGCG ACACTGCGTC AGATGGAGGA CTTGGGGCTT
TTGGTTAACG ACTCTAAGCT GACCTTATAC GTCCGACATG GGGTCGTGTT CCCTTCCACT
CAACGCCTGC AAGCTACCTT ACAGCTCGAG TCTGCCTTGT TCGACCTGCT GCAGGAACTG
GCGCCTGAGG CCGAGAGTGG GGAATGGCAG GACCTGAACG TGCCACTGTT GACCTCGACG
CTCAAAACAG CTTCTGGTAA CAAGGACCTG ATACCGCTTC ACGTGTTGCG ACTGCTGCGC
AGCCTGGCCC AAGATCACGA CAGCAATAGC CAGCAGCGCA GCAGTTTCGA ACTGCGCCAG
ATCACTCAGG ATTTCCTCAA GTTGCGCATC CGCGGCGGAC ACAACTGGAG AGCTATTCAA
GGGCTGGGAG AGCGTCGACG TGCTTTGGCC GCTGTCGTCC TCACGTTTTT GATTGGCAAA
TTACCGCCGG GTTCACGCAA CAAAGACCTG TTAGTGGATA CTACGTTCGG CGAACTTATG
GGCCTGATTG ATCTGGATCT TGAGCTGCGC ACTAGAATCC CAGAGTCGCA GCGCCGCAAG
GCCGTTGAGC ACGTACTGCT GTACCTGCAT AAGCAAGAAG TGATTACGCT GAACCACGGC
ATGACAGTCA TGCGTCGGGC TATGACGATT GAAGTCGAGG GGGGAAAGCG CACCGGATTC
CTGAAAGATG ATTATCAGCG TCTTGATGAG CACTACCGAG AAAAACGTAT TCAGGTTCAC
GTCATGCGCG AGTATGCCGA GGTTGGGCTT GGCTCGATGG GCTATGCCCT GGATCTCGTT
CAGCACTATT TCACACTAGC CAAACAGGAG TTCATTCGCC GCTACTTCGT AGATCGCGAG
GAGGTACTTA AGCTAGCCAC GAGTGAGGAA TCTTGGCGTA GCATTGTCGA GAAGCTTAGT
GCTGCTCAGC GGATCATCGT GTCCGATGAT GATGATGTGA ATCGCCTGAT TCTGGCTGGG
CCCGGCTCCG GCAAAACGCG TGTGATCGTG CATCGAATCG CTTACCTGTT GCGAGTTCGT
CGCGTTCCGG CGCGCTGTAT CGTGGCTTTG ACGTTCAACC GGCATGCAGC AAATGAGATC
AAGCAGCGCC TGATCAAGTT GGTTGGCGCT GATGCCTTTG GGGTCAACGT GATGACGTAT
CATCGCATGG CCATGCGCCT GACGGGCACT CGCTTCGAGC GAGGTGAAAC GCTTGAAGAA
GGGCGATTAG CCCAGGTGAT GGGAGAGGCT GTTGAGTTGC TTGAAGGCAA GCGTCAGGTA
GAAGGGGAGG ACGATCTGCG CGAGCAATTG ATGCGAGGCT ACCGCTACAT CCTCGTTGAT
GAGTACCAGG ACATTGATGA CCTACAGTAT CGGCTCGTAA GTGCGCTGGC CGGGCGTAAG
TCTGAAGAAG AAGGGCGCTT GTGCATTTTG GCAGTCGGTG ACGATGATCA GAACATCTAC
GCCTGGCGGG ATACGAATAA CCGCTATATA GAGCGCTTTC GCGATGAGTA TTCGGCTACA
AAGAACTATC TGGTCGACAA CTACCGTTCC AGCGGTCGCA TCATTGATGC GGCTAACCGG
GTTATTGGTC GTAACCCAGA TCGCCTGAAA AAGGACCATC CGATTCAGAT TGATACTGTT
CGTCGCGCAA TGCCGAAAGG CGGTGACTGG GAAACCCTCG ACATTGAGCG GGAGGGGCGC
GTGCTTCGCC TCAAAATAGA CGCTCAGGGC CACGCACGGG TTAATCTGCA AGCCCAGGCA
GCGATGACAG AGTTGCAGCG CCTGCTCAGT TTGGACAGCG AGGATTGGCA TGGGTGTGCC
GTGCTAGCCC GCACCCATCA AAACCTGCTG CCCCTTCAGG CGTGGTGTGA AGCTCACGGC
GTTCCATATT GTTTGGCAGC CGACAAGGAA GGTGTCTTAC CTCTCACCGC TCAACGTGGC
TTCGTGCAGG CTGTTGAAAT ACTAAGAGAG ATTACCGAAC CGCTGAGTGC CTCCGAGACA
TGGACATATC TAGGTAAGAG GCAGCTCGGG CCAGAATGGT ACGACATGTT ACTCGTCGCC
TTTGATCAGC TAACAGCCGA GTTCGGACAA TGTCCGCTAA GTGCTGAGAT CCTGCTCGAT
TGGCTCTATG ACTATTTCCG GGAGCTGCGT CAGCAACCTA GAAAGGGTCT CTATCTGGGC
ACTGTCCACT CCGCCAAAGG CCTGGAGTTC CGCCACGTAG TCGTGCTTGA CGGCGGCTGG
TCCACGCAGC CTGAAACGCT TAGCGATGAG CGTCGACTCT ACTACGTGGG CATGACTCGC
GCCGAGCAGA CTTTAACCTT GTGTGAATAC CCAGAAGGCA ATCCTTTCTG CAGCCAACTT
ACGGAAGAGG TCATGGCGCG AACCTTCCAA GGAGAATACC TTGCGGAGCT GGAGAAGCGT
TACCTACAAC TCTCTTTGAA GGACATTGAT CTTGATTATG CTGGGCGTCA GAACCCTACG
GCATCAATAC ACAAGGTATT GGCAGCGCTT GAACCTGGCG ACATGCTTTC GTTTAAAGCT
CATGAAGATA GATATCTGAT TCAGGACGCC AACGGTTATG TTATTGGCCG CACAGCAAAA
TCATTCAGCC TAGATCTTGA TATTGAGGAG TGTGAAGTGG CGGCTGTTTT GGTTCGGCGT
TCTGACCGGT GTGAAGAGTC GTTTCGAGCT TATCATCGTT CGCAAGAGTG GGAGCTAGTC
GTGCCGAGAA TCGCTGGCCG GGTCGTAATG AGCGATACAT AA
|
|---|
| Protein sequence | MSGGNSVLAP WVRHQFPATG KLIAELRDIP CGESQCDYCS TTHDPRHELR RYFAPIQDFR
TEPDGRSLQH DVVLAGMQGK HVLAILATGG GKSLCYQLPA LNRFHRNGSL TIIISPLQSL
MKDQVDGLLA RNVQCAATLN GLLTMPERAE VLEKIQLGDV GILLVSPEQF RNMAFRRAIS
QRQVGAWIFD EAHCLSKWGA DFRPDYLYVS RFIKQFSGDG PLAAIGCFTA TAKPDVLEDI
EQHFKEQLGI TFKHFIGTHE RTNLHFEVLP CSRSEKRHHA QTLIEEELGT REGGAVIFVS
SRKGAEELAD FLIGHGWACK YFHAGLEPHE KKDIQDAFKG GELKIIVATN AFGMGVDKPD
IRLVIHADIP GSLENYLQEA GRAGRDQGQA RCVLLYDAQD IENQFGMCER SKLTLRDIQQ
ILRKLRKESD RRKGSRLVIT AGEVLMDEHV DTSFEAGERD AETKVATAVS WLERGQFLKR
EENQTQIFPA SLKLTKEEAD KRLATVKLSA RRLEEFRAIL SYLYEANVDE RINTDALMAL
TSLTSEEVTA TLRQMEDLGL LVNDSKLTLY VRHGVVFPST QRLQATLQLE SALFDLLQEL
APEAESGEWQ DLNVPLLTST LKTASGNKDL IPLHVLRLLR SLAQDHDSNS QQRSSFELRQ
ITQDFLKLRI RGGHNWRAIQ GLGERRRALA AVVLTFLIGK LPPGSRNKDL LVDTTFGELM
GLIDLDLELR TRIPESQRRK AVEHVLLYLH KQEVITLNHG MTVMRRAMTI EVEGGKRTGF
LKDDYQRLDE HYREKRIQVH VMREYAEVGL GSMGYALDLV QHYFTLAKQE FIRRYFVDRE
EVLKLATSEE SWRSIVEKLS AAQRIIVSDD DDVNRLILAG PGSGKTRVIV HRIAYLLRVR
RVPARCIVAL TFNRHAANEI KQRLIKLVGA DAFGVNVMTY HRMAMRLTGT RFERGETLEE
GRLAQVMGEA VELLEGKRQV EGEDDLREQL MRGYRYILVD EYQDIDDLQY RLVSALAGRK
SEEEGRLCIL AVGDDDQNIY AWRDTNNRYI ERFRDEYSAT KNYLVDNYRS SGRIIDAANR
VIGRNPDRLK KDHPIQIDTV RRAMPKGGDW ETLDIEREGR VLRLKIDAQG HARVNLQAQA
AMTELQRLLS LDSEDWHGCA VLARTHQNLL PLQAWCEAHG VPYCLAADKE GVLPLTAQRG
FVQAVEILRE ITEPLSASET WTYLGKRQLG PEWYDMLLVA FDQLTAEFGQ CPLSAEILLD
WLYDYFRELR QQPRKGLYLG TVHSAKGLEF RHVVVLDGGW STQPETLSDE RRLYYVGMTR
AEQTLTLCEY PEGNPFCSQL TEEVMARTFQ GEYLAELEKR YLQLSLKDID LDYAGRQNPT
ASIHKVLAAL EPGDMLSFKA HEDRYLIQDA NGYVIGRTAK SFSLDLDIEE CEVAAVLVRR
SDRCEESFRA YHRSQEWELV VPRIAGRVVM SDT
|
|---|
| |