| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2906 |
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| Symbol | |
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| ID | 3368426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 3485827 |
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| End bp | 3486996 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637653252 |
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| Product | pilus retraction protein PilT |
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| Protein accession | YP_235978 |
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| Protein GI | 66046137 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.146208 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTCC CGGCGCTGTT GAAGATTCTG GCCAGTCAGG ACGGATCGGA CCTGTACCTC
TCCACCGGAG CGCCACCGTG CGCCAAGTTC AACGGTGTGC TCAAGCCACT GGGCAGCGAA
ACCTTCAAGC CGGGGGAGGT CGCAGTCATT GCCCAGGGGC TGATGGACGA AGAACAGAAG
CTCGAGTTTC AACGCGAACT GGAGATGAAC CTCGCCGTTT CGATGGCGGG CATCGGCCGG
TTCCGGATCA ATATCTTTAT GCAGCGCAAC GAAGTGTCCA TCGTCGCGCG GAATATCAAA
CTGGACATCC CGCGTTTCGA AGACCTGTTC CTGCCGCCCG TGCTGCTCGA CGTGATCATG
GAAAAGCGCG GTCTGGTGCT GTTTGTCGGG GCCACGGGTT CGGGCAAGTC GACCTCATTG
GCGGCGCTGA TCGACTACCG TAACCGCAAC GCCAGCGGCC ATATCATCAC CATTGAGGAC
CCGGTCGAGT TCATCCATCG CCACAAGAAA TCGATCGTCA ACCAGCGCGA AGTCGGGGTC
GATACCCGCA GCTTCCATGC GGCATTGAAA AACACGCTGC GCCAGGCGCC GGATGTGATT
CTGATCGGCG AGATTCGTGA TCGCGAGACC ATGGAGCACG CGCTGGCGTT TGCCGACACC
GGCCACCTGG CGATCTCGAC CCTGCACGCC AACAACGCCA ATCAGGCGCT GGACCGGATC
ATCAATTTCT TCCCGGAAGA GCGTCGCGCG CAGTTGCTGC ATGACCTGGG CAACAACCTC
AAGGCATTCG TCTCCCAGCG ACTGGTCAGA ACACCGGATG GCAAGCGCCG CGCGGCGGTG
GAAGTGATGA TGGGCACACC GACCATTCGC GACCTGATCC AGCGCAATGA ACTGACCGAA
CTCAAGGGCA TCATGGAGAA GTCCGGCAGC CTCGGTATGC AGACGTTCGA CTCTGCGCTA
TTCAATCTGG CCGTCGAAGG GGCGATCAGC GAAGAAGAAG CCCTCAAGAA CGCCGACTCG
CAGAACAACG TGCGCCTGCG CCTCAAACTG CACAGTGAAG GCGGCGCCGG GAGCCTCACC
ACACCGCCGC CGGCCCCGAC CGGCAGCAGC ACGGCAAGCA CCGCAGAGTG GGGGCTGGTC
GATGATGACG CGCCGGGTCC GCAGGCGTAA
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| Protein sequence | MDFPALLKIL ASQDGSDLYL STGAPPCAKF NGVLKPLGSE TFKPGEVAVI AQGLMDEEQK
LEFQRELEMN LAVSMAGIGR FRINIFMQRN EVSIVARNIK LDIPRFEDLF LPPVLLDVIM
EKRGLVLFVG ATGSGKSTSL AALIDYRNRN ASGHIITIED PVEFIHRHKK SIVNQREVGV
DTRSFHAALK NTLRQAPDVI LIGEIRDRET MEHALAFADT GHLAISTLHA NNANQALDRI
INFFPEERRA QLLHDLGNNL KAFVSQRLVR TPDGKRRAAV EVMMGTPTIR DLIQRNELTE
LKGIMEKSGS LGMQTFDSAL FNLAVEGAIS EEEALKNADS QNNVRLRLKL HSEGGAGSLT
TPPPAPTGSS TASTAEWGLV DDDAPGPQA
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