| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2866 |
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| Symbol | |
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| ID | 3368385 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 3440050 |
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| End bp | 3441252 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637653213 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_235940 |
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| Protein GI | 66046099 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.21396 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0804187 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAGCA AGATTTTCGC CAAATACCTG ATGACTTTGA CCTTTGTCAT CTACGCAGCC
CTTATCGGTC TTCTGAGCGG TTGTTCTGAC GGTGATTCGC CGCCTGCTGC GGAGAAACCG
AGCGTGTCGG TGGTCACCGT CAAACCGCGC AGCCAGTCGC TGACCACCGA GCTGGCGGGG
CGCACCAAAG CGTTCATGGT TGCCGAGATA CGGCCCCAGG TCAGTGGCAT CGTGCAGCAG
CGACTGTTCG TCGAAGGCGC CGAAATCAAG GCTGGTCAGC CGTTGTACCA ACTCGACAGT
GCGACCTACC AGGCGGCTCT GGCAGAATCG CAGGCCACGC TCGCCAAGTC CCGTACCACG
CTCAAGTCCG CACAGGCCAC CGCCAAACGC GATGTGCAGT TGGCCAGGAT CGACGCCATC
AGCCAGCAGG ATAAAGAAGA CGCCGAGGCC AGCCTGCTGA CTGCCGCCGC CGAGGTGAAA
GTGGCGGAGG CCGATGTGCA GACCGCACGC ATCAATCTGG CCTACACACG GATTACCGCG
CCCATCAGCG GCCGCATCGA GACCTCGACC GTGACCCCCG GTGCATTGGT GGTGGCCCAG
CAGGACACCG CGCTGACCAC GGTTCAGCAG CTCGACCCGA TTTATGTCGA TGTCACCCAG
TCCACCACCG AGTTGCTGCG TCTCAAGCGC GACCTGGCCA GCGGCAAGCT GCAAACCAAC
AGCGACGGGG AAGCCCGAAT CACCCTCAAG CTGGATGACG GCAGCACCTA CAACCAGGAT
GGCCGCCTGC AATTCAGCGG CGTCAGCGTC AATGAAGGCA CCGGCACCGT GACGCTGCGT
GCCAGCTTTG CCAACCCAGA ACGGCTGTTG CTGCCCGGCA TGTACGTGGT GGCGGTGCTG
GAACAGGCGC AGGATCAGAA TGCGATCCTG ATACCGCAAA AGGCCGTCAC CCGCAGTGCC
AGTGGCCAGA CCACGGTGTT GCTGGTGGTT GACGGCAAGA TCGAGCAGCG GGTGATCAGC
GTCGACCGCA CGGTGGGCAA CCAGTGGTGG GTGAGCAGCG GGCTCAAGGC CAATGATCAG
GTGGTGGTCG AAGGCGGGCA GAAAACCCCG GTCGGCACCG AGGTTAGCGT GCAGAACGCT
GATAACGCCG ATTCGCCAGC ATCTGGTGCT GCGGCCACTG CCGCTACCGT GAAGGAGGGC
TGA
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| Protein sequence | MSSKIFAKYL MTLTFVIYAA LIGLLSGCSD GDSPPAAEKP SVSVVTVKPR SQSLTTELAG
RTKAFMVAEI RPQVSGIVQQ RLFVEGAEIK AGQPLYQLDS ATYQAALAES QATLAKSRTT
LKSAQATAKR DVQLARIDAI SQQDKEDAEA SLLTAAAEVK VAEADVQTAR INLAYTRITA
PISGRIETST VTPGALVVAQ QDTALTTVQQ LDPIYVDVTQ STTELLRLKR DLASGKLQTN
SDGEARITLK LDDGSTYNQD GRLQFSGVSV NEGTGTVTLR ASFANPERLL LPGMYVVAVL
EQAQDQNAIL IPQKAVTRSA SGQTTVLLVV DGKIEQRVIS VDRTVGNQWW VSSGLKANDQ
VVVEGGQKTP VGTEVSVQNA DNADSPASGA AATAATVKEG
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